Table 1.
Estimates of selection coefficient | ||||
---|---|---|---|---|
Gene | SNP | Domain-adaptive SIA | SIA* [12] | Previous estimates |
KITLG | rs12821256 | 0.0035 | 0.0019 | 0.0161 [47] |
ASIP | rs619865 | 0.0057 | 0.0019 | 0.0974 [47] |
TYR | rs1393350 | 0.0028 | 0.0011 | 0.0112 [47] |
OCA2 | rs12913832 | 0.0093 | 0.0056 | 0.002 [47]; 0.036 [62] |
MC1R | rs1805007 | 0.0027 | 0.0037 | No selection [63] |
ABCC11 | rs17822931 | 0.0020 | 0.00035 | ~ 0.01 in East Asian [64] |
LCT | rs4988235 | 0.0097 | 0.010 | ~ 0.01 [37,49,50] |
TYRP1 | rs13289810 | Pneu > 0.5 | Pneu > 0.5 | No selection [47] |
TTC3 | rs1003719 | Pneu > 0.5 | Pneu > 0.5 | No selection [47] |
TCF7L2 | rs7903146 | Pneu > 0.5 | Pneu > 0.5 | N/A |
ANKK1 | rs1800497 | Pneu > 0.5 | Pneu > 0.5 | N/A |
FTO | rs9939609 | Pneu > 0.5 | Pneu > 0.5 | N/A |
The original SIA model in [12] uses genealogies inferred from simulations for training, despite the availability of ground truth genealogies.