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[Preprint]. 2023 Sep 6:2023.03.01.529396. Originally published 2023 Mar 1. [Version 2] doi: 10.1101/2023.03.01.529396

Table 1.

Selection coefficients in the European population estimated by domain-adaptive SIA compared to previous estimates

Estimates of selection coefficient
Gene SNP Domain-adaptive SIA SIA* [12] Previous estimates
KITLG rs12821256 0.0035 0.0019 0.0161 [47]
ASIP rs619865 0.0057 0.0019 0.0974 [47]
TYR rs1393350 0.0028 0.0011 0.0112 [47]
OCA2 rs12913832 0.0093 0.0056 0.002 [47]; 0.036 [62]
MC1R rs1805007 0.0027 0.0037 No selection [63]
ABCC11 rs17822931 0.0020 0.00035 ~ 0.01 in East Asian [64]
LCT rs4988235 0.0097 0.010 ~ 0.01 [37,49,50]
TYRP1 rs13289810 Pneu > 0.5 Pneu > 0.5 No selection [47]
TTC3 rs1003719 Pneu > 0.5 Pneu > 0.5 No selection [47]
TCF7L2 rs7903146 Pneu > 0.5 Pneu > 0.5 N/A
ANKK1 rs1800497 Pneu > 0.5 Pneu > 0.5 N/A
FTO rs9939609 Pneu > 0.5 Pneu > 0.5 N/A
*

The original SIA model in [12] uses genealogies inferred from simulations for training, despite the availability of ground truth genealogies.