Strain, strain background (E. coli) |
BLT5403 |
Novagen/EMD Millipore, T7 Select Kit |
Cat# 70550–3 |
|
Strain, strain background (T7 Bacteriophage) |
T7 vector arms, Packaging extract |
Novagen/EMD Millipore, T7 Select Kit |
Cat# 70550–3 |
|
Genetic reagent (T7 Bacteriophage library) |
Falciparome |
Made in this study |
|
See Materials and Methods |
Biological sample (Humans) |
Ugandan cohort plasma |
Kamya et al., 2015, Rek et al., 2016; Yeka et al., 2015
|
|
|
Biological sample (Humans) |
US control plasma |
New York Blood Center |
|
|
Antibody |
Anti-Glial Fibrillary Associated Protein (rabbit, polyclonal) |
Agilent |
Cat# Z033429-2 |
1 ug used |
Peptide, recombinant protein |
Protein A conjugated magnetic beads |
Invitrogen/Thermo Fisher Sci |
Cat# 10008D |
|
Peptide, recombinant protein |
Protein G conjugated magnetic beads |
Invitrogen/Thermo Fisher Sci |
Cat# 10009D |
|
Peptide, recombinant protein |
BSA Fraction V |
Sigma-Aldrich |
Cat# 10735094001 |
|
Peptide, recombinant protein |
T4 ligase |
New England Bio |
Cat# M0202S |
|
Peptide, recombinant protein |
Phusion DNA Polymerase |
New England Bio |
Cat# M0530L |
|
Commercial assay or kit |
T7 Select 10-3b Cloning kit |
EMD Millipore |
Cat# 70550–3 |
|
Commercial assay or kit |
Ampure XP Beads |
Beckman Coulter |
Cat# A63881 |
|
Software, algorithm |
CD-HIT |
Fu et al., 2012; Li and Godzik, 2006
|
http://weizhongli-lab.org/cd-hit/
|
|
Software, algorithm |
numpy |
Open Source |
https://doi.org/10.1109/MCSE.2011.37
|
|
Software, algorithm |
scipy |
Open Source |
https://www.nature.com/articles/s41592-019-0686-2
|
|
Software, algorithm |
Matplotlib |
Open Source |
https://ieeeexplore.ieee.org/document/4160265
|
|
Software, algorithm |
Cutadapt |
Martin, 2011
|
https://cutadapt.readthedocs.io/en/stable/
|
|
Software, algorithm |
Cytoscape |
Shannon et al., 2003
|
https://cytoscape.org
|
|