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. 2001 Nov;69(11):6863–6873. doi: 10.1128/IAI.69.11.6863-6873.2001

TABLE 1.

PCR primers and conditions used in this study

Primer designation Primer sequence (5′—3′) Target PCR condition
Length of PCR product (bp) Reference
Denaturing
Annealing
Extension
Temp (°C) Time (s) Temp (°C) Time (s) Temp (°C) Time (s)
K260 GAG CGA ATA TTC CGA TAT CTG GTT selC 94 90 60 90 72 120 2,173 65
K295 CGC CGA TTT TTC TTA GCC CA
K255 GGT TGA GTC GAT TGA TCT CTG G selC-LEE left junction 94 90 60 90 72 120 405 65
K260 GAG CGA ATA TTC CGA TAT CTG GTT
K295 CGC CGA TTT TTC TTA GCC CA selC-LEE right junction 94 90 60 90 72 120 418 65
K296 CAT TCT GAA ACA AAC TGC TC
SK1 CCC GAA TTC GGC ACA AGC ATA AGC eae 94 30 52 60 72 60 863 49
SK2 CCC GGA TCC GTC TCG CCA GTA TTC G
ANK-49 ATG TTA TCC TCA TAT AAA ATA AAC pas 94 20 50 60 72 120 1,221 21
ANK-50 TTA ATA CGA CAG TGG AAT ATG
escC-U AGA CAA CAC CAG GGA CGA C escC 94 60 56 60 72 90 575 This study
escC-L ACA AGC TGC CCC GTC CTC T
escF-U ATG GCG GAT TGA GAC ACC T escF 94 60 52 60 72 90 518 This study
escF-L TCA ACA TTC CAC TTT CTA CG
espI-I ATG GAC AGA GTG GAG ACA G espI 94 30 52 60 72 60 560 This study
espI-II GCC ACC TTT ATT CTC ACC A
iha-I CAG TTC AGT TTC GCA TTC ACC iha 94 30 56 60 72 90 1,305 This study
iha-II GTA TGG CTC TGA TGC GAT G
btuB-I GCC CCT TCC CAC TGT TTA CT btuB 94 30 55 60 72 90 1,032 This study
btuB-II GGT ATT GAT TGA TGG AGT GCG
espI-B GAG AAA GAC TGG AAA AAT CAA G espI-iha 94 30 54 60 72 240 3,916 This study
iha-A GGC AAG GAC AAC CCC ATC T
iha-B CGT GAT GGT GAT AAC AAA GG iha-btuB 94 30 54 60 72 90 1,325 This study
btuB-A CGG AAA AGA GTA AAC AGT GG