TABLE 1.
PCR primers and conditions used in this study
Primer designation | Primer sequence (5′—3′) | Target | PCR condition
|
Length of PCR product (bp) | Reference | |||||
---|---|---|---|---|---|---|---|---|---|---|
Denaturing
|
Annealing
|
Extension
|
||||||||
Temp (°C) | Time (s) | Temp (°C) | Time (s) | Temp (°C) | Time (s) | |||||
K260 | GAG CGA ATA TTC CGA TAT CTG GTT | selC | 94 | 90 | 60 | 90 | 72 | 120 | 2,173 | 65 |
K295 | CGC CGA TTT TTC TTA GCC CA | |||||||||
K255 | GGT TGA GTC GAT TGA TCT CTG G | selC-LEE left junction | 94 | 90 | 60 | 90 | 72 | 120 | 405 | 65 |
K260 | GAG CGA ATA TTC CGA TAT CTG GTT | |||||||||
K295 | CGC CGA TTT TTC TTA GCC CA | selC-LEE right junction | 94 | 90 | 60 | 90 | 72 | 120 | 418 | 65 |
K296 | CAT TCT GAA ACA AAC TGC TC | |||||||||
SK1 | CCC GAA TTC GGC ACA AGC ATA AGC | eae | 94 | 30 | 52 | 60 | 72 | 60 | 863 | 49 |
SK2 | CCC GGA TCC GTC TCG CCA GTA TTC G | |||||||||
ANK-49 | ATG TTA TCC TCA TAT AAA ATA AAC | pas | 94 | 20 | 50 | 60 | 72 | 120 | 1,221 | 21 |
ANK-50 | TTA ATA CGA CAG TGG AAT ATG | |||||||||
escC-U | AGA CAA CAC CAG GGA CGA C | escC | 94 | 60 | 56 | 60 | 72 | 90 | 575 | This study |
escC-L | ACA AGC TGC CCC GTC CTC T | |||||||||
escF-U | ATG GCG GAT TGA GAC ACC T | escF | 94 | 60 | 52 | 60 | 72 | 90 | 518 | This study |
escF-L | TCA ACA TTC CAC TTT CTA CG | |||||||||
espI-I | ATG GAC AGA GTG GAG ACA G | espI | 94 | 30 | 52 | 60 | 72 | 60 | 560 | This study |
espI-II | GCC ACC TTT ATT CTC ACC A | |||||||||
iha-I | CAG TTC AGT TTC GCA TTC ACC | iha | 94 | 30 | 56 | 60 | 72 | 90 | 1,305 | This study |
iha-II | GTA TGG CTC TGA TGC GAT G | |||||||||
btuB-I | GCC CCT TCC CAC TGT TTA CT | btuB | 94 | 30 | 55 | 60 | 72 | 90 | 1,032 | This study |
btuB-II | GGT ATT GAT TGA TGG AGT GCG | |||||||||
espI-B | GAG AAA GAC TGG AAA AAT CAA G | espI-iha | 94 | 30 | 54 | 60 | 72 | 240 | 3,916 | This study |
iha-A | GGC AAG GAC AAC CCC ATC T | |||||||||
iha-B | CGT GAT GGT GAT AAC AAA GG | iha-btuB | 94 | 30 | 54 | 60 | 72 | 90 | 1,325 | This study |
btuB-A | CGG AAA AGA GTA AAC AGT GG |