KEY RESOURCES TABLE

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Antibodies
Anti-CD19	Leica Biosystems	clone BT51E
Anti-CD19 specific scFv	Jena et al.59	clone 136.20.1
Deposited data
Targeted DNA Sequencing data	dbGaP	Accession Number Pending
RNA sequencing data	dbGaP	Accession Number Pending
LM22 signature matrix (CIBERSORTx)	Newman et al., 2015	N/A
Oligonucleotides
xGen Lockdown Probes	IDT	https://www.idtdna.com/
SeqCap EZ Choice Probes	Roche	https://sequencing.roche.com/
Software and algorithms
CIBERSORTx	Newman et al., 2015	https://cibersortx.stanford.edu/
FACTERA	Newman et al.18	https://factera.stanford.edu/
LymphGen Classifier	Wright et al.60	https://llmpp.nih.gov/lymphgen/index.php
METAVOL	Hirata et al.61	www.metavol.org
MATLAB version 2020b	Mathworks	https://www.mathworks.com/products/matlab.html
R Statistical Software version 4.0.3	The R Foundation	https://www.r-project.org
survival package	CRAN Repository	https://cran.r-project.org/web/packages/survival/index.html
softimpute package	CRAN Repository	https://cran.r-project.org/web/packages/softImpute/index.html
maxstat package	CRAN Repository	https://cran.r-project.org/web/packages/maxstat/index.html
Fast Gene Set Enrichment Analysis (FGSEA) package	Korotkevich et al.62	https://github.com/ctlab/fgsea/
afterqc package	Chen et al.63	https://github.com/OpenGene/AfterQC