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. 2023 Mar 2;55(3):507–518. doi: 10.1038/s41588-023-01302-4

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — a, The pearl millet accessions are derived from geographically representative regions (PmiG: Tift 23D2B1-P1-P5). The geographical map was adapted from the one provided by the NASA Earth Observatory (https://visibleearth.nasa.gov/images/147190/explorer-base-map/147191w/). b, Synteny plot across the ten genomes. c, Core gene clusters and pan-genome of pearl millet. The histogram illustrates the core gene clusters (present in all genomes), dispensable gene clusters (present in 2–10 genomes) and private gene clusters (present in one genome). d, Composition of gene and nucleotide diversity (pi) in core, dispensable and private genes. The center line represents the median; the box limits represent the upper and lower quartiles; the whiskers represent 1.5 times the interquartile range (IQR). Significant differences were tested by two-tailed t-test (**P < 0.01, ***P < 0.0005).