Skip to main content
. 2023 Feb 21;3(2):100411. doi: 10.1016/j.crmeth.2023.100411
REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, peptides, and recombinant proteins

Erlotinib Hydrochloride EGFR inhibitor MedChemExpress(MCE) HY-12008; CAS: 183319-69-9
Gefitinib (ZD1839) EGFR inhibitor MedChemExpress(MCE) HY-50895; CAS: 184475-35-2
AZD1775 Wee1 inhibitor MedChemExpress(MCE) HY-10993; CAS: 955,365-80-7
MK-5180 Aurora A inhibitor MedChemExpress(MCE) HY-13252; CAS: 1010085-13-8
Etoposide Topoisomerase-II inhibitor MedChemExpress(MCE) HY-13629; CAS: 33419-42-0
Dinaciclib CDK inhibitor MedChemExpress(MCE) HY-10492; CAS: 779353-01-4

Critical commercial assays

Counting Kit-8 (CCK8) assay Sigma-Aldrich M5655

Deposited data

DrugComb Zagidullin et al.41 https://drugcomb.fimm.fi/
DrugCombDB Liu et al.42 http://drugcombdb.denglab.org/main
AstraZeneca-Sanger Drug Combination Prediction Menden et al.43 https://www.synapse.org/#!Synapse:syn4231880/wiki/235645
LINCS L1000 Stathias et al. 81 https://lincsproject.org/LINCS/tools/workflows/find-the-best-place-to-obtain-the-lincs-l1000-data

Experimental models: Cell lines

Human:HT29 ATCC ATCC HTB-38

Software and algorithms

ForSyn This paper https://doi.org/10.5281/zenodo.7562405
Original Deep Forest Zhou et al.31 https://github.com/kingfengji/gcForest
DCE-DForest Zhang et al.37 N/A
DeepSynergy Preuer et al.18 www.bioinf.jku.at/software/DeepSynergy
MatchMaker Kuru et al.19 https://github.com/tastanlab/matchmaker
TranSynergy Liu et al.22 https://github.com/qiaoliuhub/drug_combination
SynPathy Tang et al.52 https://github.com/TangYiChing/SynPathy
DeepDDS Wang et al.23 https://github.com/Sinwang404/DeepDDS/tree/master
ChemmineR Cao et al.82 https://www.bioconductor.org/packages/release/bioc/html/ChemmineR.html
OpenBabel O'Boyle et al.83 https://openbabel.org/wiki/Category:Installation