Chemicals, peptides, and recombinant proteins |
|
Erlotinib Hydrochloride EGFR inhibitor |
MedChemExpress(MCE) |
HY-12008; CAS: 183319-69-9 |
Gefitinib (ZD1839) EGFR inhibitor |
MedChemExpress(MCE) |
HY-50895; CAS: 184475-35-2 |
AZD1775 Wee1 inhibitor |
MedChemExpress(MCE) |
HY-10993; CAS: 955,365-80-7 |
MK-5180 Aurora A inhibitor |
MedChemExpress(MCE) |
HY-13252; CAS: 1010085-13-8 |
Etoposide Topoisomerase-II inhibitor |
MedChemExpress(MCE) |
HY-13629; CAS: 33419-42-0 |
Dinaciclib CDK inhibitor |
MedChemExpress(MCE) |
HY-10492; CAS: 779353-01-4 |
|
Critical commercial assays |
|
Counting Kit-8 (CCK8) assay |
Sigma-Aldrich |
M5655 |
|
Deposited data |
|
DrugComb |
Zagidullin et al.41
|
https://drugcomb.fimm.fi/ |
DrugCombDB |
Liu et al.42
|
http://drugcombdb.denglab.org/main |
AstraZeneca-Sanger Drug Combination Prediction |
Menden et al.43
|
https://www.synapse.org/#!Synapse:syn4231880/wiki/235645 |
LINCS L1000 |
Stathias et al. 81
|
https://lincsproject.org/LINCS/tools/workflows/find-the-best-place-to-obtain-the-lincs-l1000-data |
|
Experimental models: Cell lines |
|
Human:HT29 |
ATCC |
ATCC HTB-38 |
|
Software and algorithms |
|
ForSyn |
This paper |
https://doi.org/10.5281/zenodo.7562405 |
Original Deep Forest |
Zhou et al.31
|
https://github.com/kingfengji/gcForest |
DCE-DForest |
Zhang et al.37
|
N/A |
DeepSynergy |
Preuer et al.18
|
www.bioinf.jku.at/software/DeepSynergy |
MatchMaker |
Kuru et al.19
|
https://github.com/tastanlab/matchmaker |
TranSynergy |
Liu et al.22
|
https://github.com/qiaoliuhub/drug_combination |
SynPathy |
Tang et al.52
|
https://github.com/TangYiChing/SynPathy |
DeepDDS |
Wang et al.23
|
https://github.com/Sinwang404/DeepDDS/tree/master |
ChemmineR |
Cao et al.82
|
https://www.bioconductor.org/packages/release/bioc/html/ChemmineR.html |
OpenBabel |
O'Boyle et al.83
|
https://openbabel.org/wiki/Category:Installation |