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. 2022 Dec 27;36(2):172–191. doi: 10.1007/s10548-022-00935-8

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Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — Summary of output figures generated by fMRIflows after executing the anatomical preprocessing pipeline. (Top) coronal view of the image segmentation output, showing gray matter tissue in green, white matter tissue in beige, cerebrospinal fluid in blue. (Middle) sagittal view of the brain extraction output, showing the extracted brain image in red, and the original anatomical image in gray. (Bottom) axial view of the spatial normalization output, showing the normalized brain image highlighted in yellow, overlaid over the ICBM 2009c brain template in gray. Regions in red and blue show negative and positive deformation discrepancy between the normalized subject image and the template (Color figure online)