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. 2023 Mar 14;25:26. doi: 10.1186/s13058-023-01622-7

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© The Author(s) 2023

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — RET gene expression in breast cancer cell lines measured via RNASeq. Cell lines are ranked by RET Expression, and classified by cell line PAM50 subtype. Data were generated using RNA-seq fastqs using salmon (PMID: 28263959, v0.12.0, 31-kmer quasi-mapping, gcBias, seqBias, validateMappings). Fastqs from either (1) CCLE (PMID: 22460905), (2) Marcotte et al. Cell 2016 (PMID: 26771497), (3) courtesy of Dr. Joe Gray, OHSU. Mapping reference: Homo_sapiens.GRCh38.82. Expression represented as log2-transformed TMM-normalized CPMs. PAM50s called with genefu (PMID: 26607490). Full data are available to the public at LeeOesterreich.org