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. 2022 Oct 27;41(3):332–336. doi: 10.1038/s41587-022-01467-z

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 10 — (a) UMAP of cells in MERFISH – fetal liver data. (b) Imputation of MERFISH data with scRNA-seq increases the number of genes that can be modeled with NCEMs, including receptor genes, ligand genes, and ligand–receptor pairs. (c) Distribution of selected marker genes that are both observed in scRNA-seq and in MERFISH over cell types.