Table 5.
Protein N sites submitted to positive and negative selection according to HyPhy methods.
| Codon | FUBAR |
FEL |
SLAC |
|||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Alpha | Beta | Post. prob. | Alpha | Beta | LRT | Prob. | dS | dN | Prob | |
| 9 | 1.163 | 6.688 | 0.9170 | – | – | – | – | – | – | – |
| 21 | – | – | – | 5.593 | 0.000 | 4.290 | 0.0383 | – | – | – |
| 30 | – | – | – | 5.530 | 0.000 | 3.301 | 0.0692 | – | – | – |
| 34 | 0.627 | 6.935 | 0.9841 | 0.000 | 4.547 | 5.308 | 0.0212 | – | – | – |
| 35 | – | – | – | 6.487 | 1.007 | 4.013 | 0.0452 | 5.000 | 0.500 | 0.018 |
| 40 | – | – | – | 2.586 | 0.000 | 3.399 | 0.0652 | – | – | – |
| 60 | – | – | – | 2.810 | 0.000 | 3.736 | 0.0532 | – | – | – |
| 63 | 0.626 | 6.645 | 0.9772 | 0.000 | 4.538 | 4.348 | 0.0371 | – | – | – |
| 70 | – | – | – | 11.034 | 0.000 | 3.401 | 0.0652 | – | – | – |
| 78 | – | – | – | 3.206 | 0.000 | 3.486 | 0.0619 | 2.379 | 0.000 | 0.079 |
| 100 | – | – | – | 11.034 | 0.000 | 3.763 | 0.0524 | – | – | – |
| 107 | – | – | – | 7.579 | 0.000 | 3.904 | 0.0482 | – | – | – |
| 110 | – | – | – | 6.426 | 0.000 | 11.948 | 0.0005 | 4.779 | 0.000 | 0.006 |
| 118 | – | – | – | 11.034 | 0.000 | 3.814 | 0.0508 | – | – | – |
| 149 | – | – | – | 3.211 | 0.000 | 3.613 | 0.0573 | – | – | – |
| 151 | 0.595 | 7.118 | 0.9879 | 0.000 | 5.412 | 6.086 | 0.0136 | – | – | – |
| 157 | – | – | – | 4.417 | 0.780 | 2.727 | 0.0987 | 3.213 | 0.484 | 0.092 |
| 170 | – | – | – | – | – | – | – | 3.000 | 0.000 | 0.037 |
| 172 | – | – | – | 5.021 | 0.000 | 6.599 | 0.0102 | 3.607 | 0.000 | 0.025 |
| 182 | 0.609 | 4.020 | 0.9256 | 0.000 | 3.128 | 3.258 | 0.0711 | – | – | – |
| 192 | 8.387 | 0.000 | 6.223 | 0.0126 | 5.968 | 0.000 | 0.002 | |||
| 208 | 0.604 | 4.018 | 0.9266 | 0.000 | 3.130 | 3.478 | 0.0622 | – | – | – |
| 210 | – | – | – | – | – | – | – | 58.466 | 1.127 | 0.008 |
| 215 | 0.620 | 3.320 | 0.9035 | 0.000 | 2.534 | 2.776 | 0.0957 | – | – | – |
| 221 | – | – | – | 1.500 | 0.000 | 2.827 | 0.0927 | – | – | – |
| 226 | – | – | – | 15.769 | 0.000 | 7.811 | 0.0052 | 2.425 | 0.000 | 0.085 |
| 227 | – | – | – | 3.098 | 0.000 | 5.676 | 0.0172 | 2.172 | 0.000 | 0.098 |
| 228 | – | – | – | – | – | – | – | 2.381 | 0.000 | 0.078 |
| 238 | 0.613 | 5.716 | 0.9707 | 0.000 | 3.731 | 3.992 | 0.0457 | – | – | – |
| 265 | 0.733 | 5.368 | 0.9120 | 0.000 | 4.711 | 3.278 | 0.0702 | – | – | – |
| 268 | – | – | – | 5.021 | 0.000 | 6.596 | 0.0102 | 3.573 | 0.000 | 0.026 |
| 274 | – | – | – | 10.000 | 0.000 | 17.898 | 0.000 | 7.165 | 0.000 | 0.000 |
| 289 | 1.191 | 6.872 | 0.9165 | – | – | – | – | – | – | – |
| 291 | – | – | – | 5.474 | 0.000 | 6.537 | 0.0106 | |||
| 292 | – | – | – | – | – | – | – | 5.327 | 1.455 | 0.069 |
| 296 | – | – | – | 0.000 | 3.085 | 3.082 | 0.0791 | – | – | – |
| 298 | – | – | – | 4.982 | 0.000 | 6.561 | 0.0104 | 3.572 | 0.000 | 0.026 |
| 302 | – | – | – | 6.788 | 0.000 | 7.863 | 0.0050 | 5.000 | 0.000 | 0.004 |
| 309 | – | – | – | 2.810 | 0.000 | 3.332 | 0.0680 | – | – | – |
| 312 | – | – | – | 5.721 | 0.000 | 4.285 | 0.0384 | – | – | – |
| 313 | – | – | – | 2.810 | 0.000 | 3.283 | 0.0700 | – | – | – |
| 315 | – | – | – | 3.333 | 0.000 | 5.946 | 0.0148 | 2.379 | 0.000 | 0.079 |
| 318 | – | – | – | 4.025 | 0.000 | 6.183 | 0.0129 | 3.000 | 0.000 | 0.041 |
| 327 | – | – | – | 3.999 | 0.000 | 6.181 | 0.0129 | 3.000 | 0.000 | 0.041 |
| 329 | – | – | – | 4.000 | 0.000 | 3.733 | 0.0533 | 3.000 | 0.000 | 0.037 |
| 330 | – | – | – | – | – | – | – | 0.000 | 0.428 | 1.000 |
| 333 | – | – | – | 5.021 | 0.000 | 6.565 | 0.0104 | 3.576 | 0.000 | 0.026 |
| 337 | – | – | – | 3.000 | 0.000 | 4.235 | 0.0396 | 2.142 | 0.000 | 0.097 |
| 341 | – | – | – | – | – | – | – | 3.573 | 0.463 | 0.069 |
| 344 | – | – | – | 5.675 | 0.000 | 3.621 | 0.0571 | – | – | – |
| 346 | – | – | – | 4.977 | 0.000 | 8.931 | 0.0028 | 3.573 | 0.000 | 0.022 |
| 362 | 1.235 | 7.840 | 0.9224 | – | – | – | – | – | – | – |
| 363 | – | – | – | 3.301 | 0.000 | 5.949 | 0.0147 | 2.381 | 0.000 | 0.078 |
| 366 | 1.235 | 7.819 | 0.9223 | – | – | – | – | – | – | – |
| 372 | – | – | – | 11.754 | 0.000 | 3.770 | 0.0522 | – | – | – |
| 382 | – | – | – | 3.649 | 0.000 | 4.552 | 0.0329 | – | – | – |
| 391 | 0.602 | 5.676 | 0.9571 | 0.000 | 4.605 | 4.619 | 0.0316 | – | – | – |
| 398 | – | – | – | 11.102 | 1.047 | 3.909 | 0.0480 | – | – | – |
| 403 | – | – | – | 1.667 | 0.000 | 2.970 | 0.0848 | – | – | – |
| 404 | – | – | – | 2.810 | 0.000 | 4.459 | 0.0347 | – | – | – |
Post. prob.: Posterior probability. Prob: Probability. Bold rows indicate positive selection test results.