KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
| ||
Antibodies | ||
| ||
Mouse monoclonal ant-Phospho-STAT3 (Tyr705) (M9C6) | Cell Signaling Technology | Cat# 4113 RRID: AB_2198588 |
Rabbit monoclonal ant-Phospho-STAT3 (Ser727) | Cell Signaling Technology | Cat# 9134 RRID: AB_331589 |
Mouse monoclonal anti-STAT3 (124H6) | Cell Signaling Technology | Cat# 9139 RRID: AB_331757 |
Rabbit polyclonal anti-AKT | Thermo Fisher Scientific | Cat# PA5-96351 RRID: AB_2808153 |
Rabbit polyclonal anti-Phospho-AKT (Ser 124) | Thermo Fisher Scientific | Cat# PA5-105161 RRID: AB_2816634 |
Rabbit polyclonal anti-Phospho-Src (Tyr418) | Millipore | Cat# 07-909; RRID: AB_568805 |
Rabbit polyclonal anti-Src | Cell Signaling Technology | Cat# 2108; RRID: AB_331137 |
Rabbit anti-Phospho-p70 S6 Kinase (Thr421/Ser424) | Cell Signaling Technology | Cat# 9204 RRID: AB_2265913 |
Rabbit anti-p70 S6 Kinase | Cell Signaling Technology | Cat# 9202 RRID: AB_331676 |
Rabbit monoclonal anti-Phospho-EGF Receptor (Tyr1068) (D7A5) | Cell Signaling Technology | Cat# 3777; RRID: AB_2096270 |
Rabbit polyclonal anti-EGF Receptor | Cell Signaling Technology | Cat# 2232; RRID: AB_331707 |
Mouse monoclonal anti-b-Actin (8H10D10) | Cell Signaling Technology | Cat# 3700; RRID: AB_2242334 |
Rabbit polyclonal anti-KIF15 | Thermo Fisher Scientific | Cat# 55407-1-AP; RRID: AB_11182836 |
Rabbit monoclonal anti-α-Tubulin (11H10) | Cell Signaling Technology | Cat# 2125; RRID: AB_2619646 |
Rabbit monoclonal anti-COX IV (3E11) | Cell Signaling Technology | Cat# 4850; RRID: AB_2085424 |
Rabbit anti-Caspase-3 | Cell Signaling Technology | Cat# 9662; RRID: AB_331439 |
Mouse monoclonal anti-DDDDK-Tag | MBL International | Cat#M185-3L; RRID: AB_11123930 |
Rabbit anti-Phospho-Histone H3 (Ser 10) | Cell Signaling Technology | Cat# 9701; RRID: AB_331535 |
Rabbit monoclonal anti-Histone H3 (D1H2) | Cell Signaling Technology | Cat#4499; RRID: AB_10544537 |
| ||
Bacterial and virus strains | ||
| ||
PDGF-IRES-Cre retrovirus | Lei et al. (2011); Kenchappa et al. (2020) | NA |
pAdCMV/v5-DEST-S727D-STAT3-3xFlag plasmid | Addgene | Cat# 99263 |
pAdCMV/v5-DEST-S727A-STAT3-3xFlag plasmid | Addgene | Cat# 99262 |
STAT3-C Flag pRc/CMV | Addgene | Cat# 8722 |
pLenti Lifeact-EGFP BlastR plasmid | Addgene | Cat# 84383 |
| ||
Chemicals, peptides, and recombinant proteins | ||
| ||
PDGF-AA | Peprotech | Cat# 100-13A |
hFGF (Human Fibroblast Growth factor ) | R&D systems | Cat# 233-FB-025 |
hEGF (Human Epidermal Growth Factor) | Sigma-Aldrich | Cat# E9644 |
Fibronectin | Millipore-Sigma | Cat# FC010 |
Heparin | STEMCELL Technologies | Cat# 07980 |
N2 supplement | Gibco life technologies | Cat# 17502-048 |
NeuroPlex supplement | Gemini | Cat# 400-161 |
Ispinesib | Axon Medchem | Cat# 2446-25 |
SH5-07 | Selleck Chemicals | Cat# S7923 |
Saracatinib | Selleck Chemicals | Cat# S1006 |
Dasatinib | Selleck Chemicals | Cat# S1021 |
Etoposide | Selleck Chemicals | Cat# S1225 |
Elacridar | Selleck Chemicals | Cat# S7772 |
Rhodamine Phalloidin | Cytoskeleton | Cat# PHDR1 |
VECTASHIELD with DAPI | Vector Laboratories | Cat# U-1500 |
Formaldehyde, 10% methanol free | CHEM (VWR) | Cat# 87001-890 |
SUPER signal West Pico PLUS Chemiluminescent substrate | Thermo Fisher Scientific | Cat# 34580 |
PBS | Thermo Fisher Scientific | Cat# 21-040 |
PVDF membrane | Biorad | Cat# 1620174 |
DMSO | Corning | Cat# 25-950-cqc |
BSA | Thermo Fisher Scientific | Cat# 23209 |
Non-fat dry milk (Blotting grade blocker) | Biorad | Cat# 170-6404 |
Accutase | Sigma-Aldrich | Cat# A6964-500 |
Ethanol | Thermo Fisher Scientific | Cat# 61500-0020 |
Tween 20 | Sigma-Aldrich | Cat# P1379 |
TBS | Thermo Fisher Scientific | Cat# 28358 |
Protease Inhibitor Cocktail, EDTA-free (100X) | Thermo Fisher Scientific | Cat# 87785 |
Pierce T-1step transfer buffer | Thermo Fisher Scientific | Cat# 84731 |
Western blot striping buffer | Thermo Fisher Scientific | Cat# 46430 |
10X Tris/Glycine/SDS buffer | Biorad | Cat# 1610772 |
Geltrex | Gibco | Cat# A14132-01 |
Laminin | Thermo Fisher Scientific | Cat# 3400-010-02 |
RIPA lysis buffer | Thermo Fisher Scientific | Cat# 89900 |
B27 supplement | Thermo Fisher Scientific | Cat# A3582801 |
Laemmli SDS Sample Buffer, reducing, 6X | Thermo Fisher Scientific | Cat# AAJ61337AC |
Anti-Anti (100x) | Gibco | Cat# 15240-062 |
D-Luciferin | Perkin Elmer | Cat# 122799 |
Lipofectamine 3000 transfection agent | Life Technologies | Cat# 11668027 |
Doxorubicin | Selleck Chemicals | Cat# S1208 |
Blasticidine-S-Hydrochloride | Sigma-Aldrich | Cat# SBR00022 |
Kif15-IN-1 | Medchem Express | Cat# HY-15948/CS-2697 |
Nocodazole | EMD Millipore | Cat# 487928 |
| ||
Critical commercial assays | ||
| ||
CellTiter-Glo 2.0 assay kit | Promega | Cat# G9242 |
Pierce™ BCA Protein Assay Kit | Thermo Fisher Scientific | Cat# 23225 |
RNAqueous™ Total RNA Isolation Kit | Thermo Fisher Scientific | Cat# AM1912 |
TURBO DNA-free™ Kit | Thermo Fisher Scientific | Cat# AM1907 |
Mitochondria Isolation Kit for cultured cells | Abcam | Cat# ab110170 |
Nuclear Extraction Kit | Abcam | Cat# ab113474 |
| ||
Experimental models: Cell lines | ||
| ||
Trp53−/− | This paper | NA |
Trp53/Pten−/− | This paper | NA |
GBM1A | (Galli et al., 2004) | NA |
GBML1 | (Deleyrolle et al., 2011) | NA |
GBM612 | Kenchappa et al. (2020) | NA |
GBM108 | Gift from Dr. Quiñones-Hinojosa | NA |
GBM120 | Kenchappa et al. (2020) | NA |
MES1861 | Reilly et al. (2000); Gürsel et al., 2011 | NA |
MES4622 | Reilly et al. (2000); Gürsel et al., 2011 | NA |
PN20 | Hambardzumyan et al. (2009) | NA |
PN24 | Hambardzumyan et al. (2009) | NA |
PN62 | Hambardzumyan et al. (2009) | NA |
| ||
Experimental models: Organisms/strains | ||
| ||
Trp53fl/fl mice | Jackson Laboratory | Stock# 008462 |
NOD-SCID mice | Jackson Laboratory | Stock# 005557 |
Wild type FVB mice | Taconic Biosciences Inc | NA |
FVB mice | Taconic Biosciences Inc | NA |
| ||
Software and algorithms | ||
| ||
Gene Set Enrichment Analysis (GSEA), hallmark analysis (version h.all.v7.0) | Broad Institute | http://software.broadinstitute.org/gsea/index.jsp |
| ||
Deposited data | ||
| ||
Bulk and single cell RNA-seq data | Gene Expression Omnibus database |
GSE193180 (all) GSE193178 (bulk RNA-seq) GSE193179 (scRNA-seq) |
Mass spectrometry proteomics data | ProteomeXchange Consortium | PXZD030715https://doi.org/10.6019/PXD030715 |