Table 1. Cats included in the study and statistics summary of RNA sequencing data.
Sample | Group | Age (years) | Breed | Sex | Read pairs post trimming, n | Ribosomal RNA, % | Mitochondrial RNA, % | Uniquely mapped read pairs, % | Reads mapped to same strand, % | Reads mapped to opposite strand, % | Reads with not determined strand, % |
---|---|---|---|---|---|---|---|---|---|---|---|
LV1 | Healthy LV | 1.5 | DSH | Male | 47,478,136 | 0.03 | 19.55 | 76.09 | 91.55 | 2.30 | 6.15 |
LV2 | Healthy LV | 1.5 | DSH | Male | 43,888,937 | 0.03 | 21.93 | 71.16 | 92.42 | 2.48 | 5.10 |
LV3 | Healthy LV | 1.5 | DSH | Male | 44,123,313 | 0.03 | 18.25 | 74.39 | 91.12 | 2.50 | 6.39 |
LV4 | Healthy LV | 1.5 | DSH | Male | 42,265,613 | 0.03 | 18.10 | 74.32 | 91.80 | 2.40 | 5.80 |
LV5 | Healthy LV | 1.5 | DSH | Male | 49,505,256 | 0.03 | 18.30 | 73.29 | 90.90 | 2.49 | 6.61 |
LV6 | HCM LV | 9 | DSH | Male | 43,888,937 | 0.03 | 21.93 | 71.16 | 92.42 | 2.48 | 5.10 |
LV7 | HCM LV | 14 | DSH | Male | 44,077,351 | 0.03 | 17.35 | 71.55 | 90.74 | 2.59 | 6.67 |
LV8 | HCM LV | 15 | DLH | Male | 43,482,375 | 0.03 | 25.00 | 72.94 | 91.46 | 2.50 | 6.04 |
LV9 | HCM LV | 13 | DSH | Male | 48,884,797 | 0.03 | 13.67 | 81.88 | 89.75 | 2.56 | 7.69 |
LV10 | HCM LV | 3 | DSH | Male | 42,426,885 | 0.03 | 19.62 | 77.35 | 92.11 | 2.43 | 5.46 |
LA1 | Healthy LA | 1.5 | DSH | Male | 40,543,094 | 0.03 | 20.33 | 71.69 | 92.38 | 2.67 | 4.95 |
LA2 | Healthy LA | 1.5 | DSH | Male | 45,027,733 | 0.03 | 16.67 | 77.39 | 91.72 | 2.54 | 5.74 |
LA3 | Healthy LA | 1.5 | DSH | Male | 46,014,375 | 0.03 | 16.57 | 74.57 | 91.20 | 2.48 | 6.32 |
LA4 | Healthy LA | 1.5 | DSH | Male | 40,878,409 | 0.03 | 18.18 | 77.44 | 92.21 | 2.30 | 5.49 |
LA5 | Healthy LA | 1.5 | DSH | Male | 46,098,081 | 0.03 | 15.64 | 78.41 | 91.10 | 2.61 | 6.29 |
LA6 | HCM LA | 9 | DSH | Male | 51,695,982 | 0.03 | 15.37 | 78.91 | 88.56 | 2.36 | 9.09 |
LA7 | HCM LA | 14 | DSH | Male | 51,877,661 | 0.04 | 13.18 | 63.02 | 90.69 | 2.49 | 6.82 |
LA8 | HCM LA | 15 | DLH | Male | 46,463,111 | 0.04 | 16.17 | 76.02 | 91.75 | 2.37 | 5.89 |
LA9 | HCM LA | 12 | DLH | Male | 41,948,835 | 0.04 | 19.49 | 72.29 | 90.70 | 3.51 | 5.79 |
LA10 | HCM LA | 3 | Ragdoll | Male | 50,189,962 | 0.03 | 12.69 | 80.01 | 90.71 | 2.52 | 6.76 |
Left ventricle (LV) and left atrium (LA) samples from healthy cats and cats with hypertrophic cardiomyopathy (HCM). Domestic Shorthair (DSH), Domestic Longhair (DLH) and Ragdoll cats were included in the study