TABLE 1.
SNPs with genome-wide significance associations for plumage color traits.
| Chromosome | SNP | BP (PK-2015) a | A1/A2 | A1-MAF b | OR (95% CI) c | p-value | Gene | Feature |
|---|---|---|---|---|---|---|---|---|
| 5 | chr5:38647451 C>T | 38,647,451 | T/C | 0.067 | 1.47 (1.28 ± 1.69) | 9.12 × 10−8 | ZNF106 | intron |
| 5 | chr5:38713690 C>T | 38,713,690 | T/C | 0.071 | 1.52 (1.33 ± 1.74) | 2.03 × 10−9 | STARD9 | intron |
| 5 | chr5:38743433 C>G | 38,743,433 | G/C | 0.071 | 1.52 (1.33 ± 1.74) | 2.03 × 10−9 | STARD9 | intron |
| 5 | chr5:38743534 C>T | 38,743,534 | T/C | 0.071 | 1.52 (1.33 ± 1.74) | 2.03 × 10−9 | STARD9 | intron |
| 5 | chr5:38743601 C>T | 38,743,601 | T/C | 0.071 | 1.52 (1.33 ± 1.74) | 2.03 × 10−9 | STARD9 | intron |
| 11 | chr11:19693957 G>A | 19,693,957 | A/G | 0.095 | 1.34 (1.20 ± 1.50) | 7.61 × 10−7 | SLC7A5 | intron |
| 11 | chr11:19840846 C>T | 19,840,846 | T/C | 0.100 | 1.34 (1.20 ± 1.49) | 3.16 × 10−9 | BANP | intron |
a
BP, physical position based on duck reference genome PK-2015 (https://www.ncbi.nlm.nih.gov/genome/2793?genome_assembly_id=426073).
b
MAF, minor allele frequency.
c
OR, odds ratio; 95% CI, 95% confidence interval.