Table 2.
Interleukin 1 beta (IL1B)-interacting differentially expressed miRNAs, the overlap with miRtarbase, Targetscan. lncRNAs interacting with 4 miRNAs were downloaded from Starbase database. The subcellular localisation of the lncRNAs was obtained from lncATLAS database.
| miRNA_ID | P value | logFC | lncRNAs |
|||
|---|---|---|---|---|---|---|
| In both nuclear and cytoplasm | Only in nuclear | Only in cytoplasm | No data | |||
| hsa-miR-211 | 4.43E-05 | −0.5528 | CAPN10-AS1, AC010442.1, CKMT2-AS1, EBLN3P, NEAT1, AP002761.4, NORAD, DSCAM-AS1, XIST, AL035425.3 |
MIR29B2CHG, AC073335.2, KCNQ1OT1, MALAT1, AC073896.4, AC010542.4, AC009022.1, AC007952.4, ASB16-AS1, AC018628.1, INE1 |
None | AP000553.1 |
| hsa-miR-204 | 4.02E-05 | −0.6448 | CAPN10-AS1, AC010442.1, CKMT2-AS1, EBLN3P, NEAT1, AP002761.4, NORAD, DSCAM-AS1, XIST, AL035425.3 |
MIR29B2CHG, AC073335.2, KCNQ1OT1, MALAT1, AC073896.4, AC010542.4, AC009022.1, AC007952.4, ASB16-AS1, AC018628.1, INE1 |
None | AP000553.1 |
| hsa-miR-4306 | 3.97E-06 | 0.7837 | MIR137HG, AL162258.1, AC005538.2 THUMPD3-AS1, AC008040.1, DANCR, EXOC3-AS1, AC005082.1, PEG13, NUTM2B-AS1, NEAT1, AP002761.4, AC073548.1, MIR663AHG, AC004656.1, LINC01278, XIST |
KCNQ1OT1, SNHG1,MALAT1, AC020658.3, DNAAF4-CCPG1, MCM3AP-AS1 |
AC021092.1 |
AC118758.3, GABPB1-IT1, AC130462.1, AC020978.7, |
| hsa-miR-185 | 1.73E-03 | 0.5881 | MIR137HG, AL162258.1, AC005538.2 THUMPD3-AS1, AC008040.1, DANCR, EXOC3-AS1, AC005082.1, PEG13, NUTM2B-AS1, NEAT1, AP002761.4, AC073548.1, MIR663AHG, AC004656.1, LINC01278, XIST |
KCNQ1OT1, SNHG1,MALAT1, AC020658.3, DNAAF4-CCPG1, MCM3AP-AS1 |
AC021092.1 |
AC118758.3, GABPB1-IT1, AC130462.1, AC020978.7, |