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. 2023 Feb 9;30(3):383–390. doi: 10.1038/s41594-022-00913-5

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 3 — (a) Docking of our real-space-refined CA pentamer model (yellow ribbons, with IP6 in sticks) into EMD-3466 (gray), the first reported in situ structure of the HIV-1 CA pentamer at 8.8 Å resolution⁷. (b) Docking of our real-space-refined CA hexamer model (yellow ribbons) into EMD-3465 (gray), an in situ structure of the HIV-1 CA hexamer at 6.8 Å resolution⁷. (c) Superposition of the final PDB model of the declination after real space refinement into our 3.4 Å map (orange) with PDB 5mcy (ref. ⁷) (blue).