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. 2023 Mar 7;10:1060076. doi: 10.3389/fmolb.2023.1060076

TABLE 5.

Docking score and interaction of top five hits against the 3CLpro.

C. No Docking score Ligand Receptor Residues Interaction Distance Energy (kcal/mol)
Compound 1 −12.0321 O 4 SG CYS 145 H-donor 4.06 −0.5
O 8 SG CYS 145 H-donor 4.04 −0.8
O 14 OG SER 46 H-donor 2.96 −0.6
C 28 SD MET 49 H-donor 3.89 −0.8
O 2 NE2 HIS 41 H-acceptor 3.29 −0.7
O 8 NE2 HIS 163 H-acceptor 3.05 −0.7
O 9 NE2 HIS 163 H-acceptor 3.28 −1.8
O 11 CA LEU 141 H-acceptor 3.49 −0.6
6-ring CA THR 25 π -H 4.07 −0.6
Compound 2 −11.4527 O 13 SG CYS 145 H-donor 4.40 −0.7
O 15 SD MET 49 H-donor 3.84 −0.5
O 18 O THR 26 H-donor 2.86 −1.4
O 21 OD1 ASN 142 H-donor 2.84 −0.6
O 25 SD MET 165 H-donor 3.60 −1.2
O 12 NE2 HIS 41 H-acceptor 2.96 −0.8
O 19 NE2 HIS 163 H-acceptor 3.07 −1.9
6-ring N SER 46 π-H 4.24 −1.4
6-ring N THR 90 π-H 4.33 −0.6
Compound 3 −11.2783 O 8 SD MET 49 H-donor 3.79 −0.5
O 22 SG CYS 145 H-donor 3.19 −1.1
C 26 OE1 GLN 189 H-donor 3.13 −0.9
O 22 NE2 HIS 41 H-acceptor 3.15 −1.0
O 23 NE2 HIS 163 H-acceptor 3.19 −1.0
6-ring CA LEU 141 π-H 3.80 −0.5
Compound 4 −10.9628 O 4 O THR 26 H-donor 2.80 −2.2
O 6 ND1 HIS 164 H-donor 2.95 −1.8
O 9 OG1 THR 25 H-donor 3.05 −1.6
C 13 SD MET 49 H-donor 3.81 −0.6
O 5 N GLY 143 H-acceptor 3.16 −2.7
6-ring 5-ring HIS 41 π-π 3.27 −0.0
Compound 5 −10.7164 O 10 OD1 ASN 142 H-donor 3.11 −1.9
O 15 O GLN 189 H-donor 3.07 −1.0
O 18 O THR 26 H-donor 3.01 −1.8
C 57 SD MET 49 H-donor 3.94 −0.6
O 18 N THR 26 H-acceptor 2.95 −0.9
O 30 NE2 HIS 41 H-acceptor 3.10 −0.6
IVERMECTIN −9.5398 O 5 SG CYS 145 H-donor 3.77 −0.6
O 6 O ASP 187 H-donor 2.91 −0.4
C 35 SD MET 165 H-donor 3.81 −0.5
C 45 SD MET 49 H-donor 3.49 −0.2
O 13 ND2 ASN 119 H-acceptor 3.43 −0.6