TABLE 5.
Docking score and interaction of top five hits against the 3CLpro.
| C. No | Docking score | Ligand | Receptor | Residues | Interaction | Distance | Energy (kcal/mol) |
|---|---|---|---|---|---|---|---|
| Compound 1 | −12.0321 | O 4 | SG | CYS 145 | H-donor | 4.06 | −0.5 |
| O 8 | SG | CYS 145 | H-donor | 4.04 | −0.8 | ||
| O 14 | OG | SER 46 | H-donor | 2.96 | −0.6 | ||
| C 28 | SD | MET 49 | H-donor | 3.89 | −0.8 | ||
| O 2 | NE2 | HIS 41 | H-acceptor | 3.29 | −0.7 | ||
| O 8 | NE2 | HIS 163 | H-acceptor | 3.05 | −0.7 | ||
| O 9 | NE2 | HIS 163 | H-acceptor | 3.28 | −1.8 | ||
| O 11 | CA | LEU 141 | H-acceptor | 3.49 | −0.6 | ||
| 6-ring | CA | THR 25 | π -H | 4.07 | −0.6 | ||
| Compound 2 | −11.4527 | O 13 | SG | CYS 145 | H-donor | 4.40 | −0.7 |
| O 15 | SD | MET 49 | H-donor | 3.84 | −0.5 | ||
| O 18 | O | THR 26 | H-donor | 2.86 | −1.4 | ||
| O 21 | OD1 | ASN 142 | H-donor | 2.84 | −0.6 | ||
| O 25 | SD | MET 165 | H-donor | 3.60 | −1.2 | ||
| O 12 | NE2 | HIS 41 | H-acceptor | 2.96 | −0.8 | ||
| O 19 | NE2 | HIS 163 | H-acceptor | 3.07 | −1.9 | ||
| 6-ring | N | SER 46 | π-H | 4.24 | −1.4 | ||
| 6-ring | N | THR 90 | π-H | 4.33 | −0.6 | ||
| Compound 3 | −11.2783 | O 8 | SD | MET 49 | H-donor | 3.79 | −0.5 |
| O 22 | SG | CYS 145 | H-donor | 3.19 | −1.1 | ||
| C 26 | OE1 | GLN 189 | H-donor | 3.13 | −0.9 | ||
| O 22 | NE2 | HIS 41 | H-acceptor | 3.15 | −1.0 | ||
| O 23 | NE2 | HIS 163 | H-acceptor | 3.19 | −1.0 | ||
| 6-ring | CA | LEU 141 | π-H | 3.80 | −0.5 | ||
| Compound 4 | −10.9628 | O 4 | O | THR 26 | H-donor | 2.80 | −2.2 |
| O 6 | ND1 | HIS 164 | H-donor | 2.95 | −1.8 | ||
| O 9 | OG1 | THR 25 | H-donor | 3.05 | −1.6 | ||
| C 13 | SD | MET 49 | H-donor | 3.81 | −0.6 | ||
| O 5 | N | GLY 143 | H-acceptor | 3.16 | −2.7 | ||
| 6-ring | 5-ring | HIS 41 | π-π | 3.27 | −0.0 | ||
| Compound 5 | −10.7164 | O 10 | OD1 | ASN 142 | H-donor | 3.11 | −1.9 |
| O 15 | O | GLN 189 | H-donor | 3.07 | −1.0 | ||
| O 18 | O | THR 26 | H-donor | 3.01 | −1.8 | ||
| C 57 | SD | MET 49 | H-donor | 3.94 | −0.6 | ||
| O 18 | N | THR 26 | H-acceptor | 2.95 | −0.9 | ||
| O 30 | NE2 | HIS 41 | H-acceptor | 3.10 | −0.6 | ||
| IVERMECTIN | −9.5398 | O 5 | SG | CYS 145 | H-donor | 3.77 | −0.6 |
| O 6 | O | ASP 187 | H-donor | 2.91 | −0.4 | ||
| C 35 | SD | MET 165 | H-donor | 3.81 | −0.5 | ||
| C 45 | SD | MET 49 | H-donor | 3.49 | −0.2 | ||
| O 13 | ND2 | ASN 119 | H-acceptor | 3.43 | −0.6 |