Table 2:

Stability of TranNet.

	Main	Alternative	Selected-predictors	Overlap	Jaccard Index	HG p-value
BRCA	9309	8172	279	228	0.8	≈ 0.0
LUAD	8691	7225	347	282	0.805	≈ 0.0
LUSC	9965	8635	398	317	0.79	≈ 0.0
PRAD	6399	4464	127	73	0.57	8.7e-125
LIHC	7514	5806	300	215	0.711	3.5e-322

Overlap in the selected predictors based on the networks constructed form two different selection of tumor genes. Main set is described in Table 4 in Section 6 and the Alternative set was selected with a different threshold as described in Section 3.3. We selected the same number of top predictors from each list based on the number of optimal predictors for the Main set. Overlap reports the number of common predictors, Jaccard Index: Jaccard Index similarity between the two sets of the highest scoring predictors and HG p-value is hyper-geometric p value for the enrichment of the predictors obtained with the Alternative set in the Main set.