Table 2. IncC enhancement of KorB DNA-binding activity in vitro.
Purified His-KorB and its deletion derivatives used | Kappa of KorB (nM) | Kappb of KorB (nM) in the presence of IncC | Kappa/Kappb |
---|---|---|---|
Wild-type KorB | 1125 | 385 | 2.9 |
NΔ30 | 313 | 60 | 5.2 |
NΔ60 | 167 | 34 | 4.9 |
NΔ90 | 650 | 160 | 4.1 |
NΔ150 | 135 | 27 | 5.0 |
NΔ173 | No binding | No binding | ND |
BΔ11up | 61 | 13 | 4.7 |
BΔ37up | 520 | 346 | 1.5 |
BΔ10down | 64 | 20 | 3.2 |
BΔ20down | 29 | 16 | 1.8 |
aKapp was estimated experimentally in EMSA as the concentration of purified His-tagged KorB derivatives needed to shift 50% of the radioactive fragment containing OB. Kapp for NΔ173 could not be experimentally established, no binding to DNA was observed at 10 µM.
bKapp was estimated experimentally as the concentration of products of korB alleles needed to shift 50% of the labelled fragment in the presence of 581 nM IncC.