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. 2023 Mar 8;615(7953):652–659. doi: 10.1038/s41586-023-05791-5

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — a, Intrachromosomal contact matrix of assembled chromosomes. The red colour intensity indicates the normalized Omni-C Hi-C links between 1-Mb windows on each chromosome. The antidiagonal pattern in chromosome 1 represents the Rabl configuration. b, Distribution of major families of satellite repeats (FabTR-83 in green, FabTR-64 in red, FabTR-53 in magenta and FokI in yellow). c, Distribution of major families of satellite repeats on metaphase chromosomes visualized by multicolour fluorescent in situ hybridization. d, Distribution of genomic components including recombination (cM per Mb), gene density, LTR retrotransposons of Gypsy and Copia, full-length LTR-retrotransposon (fl-LTR) insertions, satellite repeats and DNA methylation (CH, CHG and CHH context) on chromosome 1. The red dashed line represents the centromere position.