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. Author manuscript; available in PMC: 2023 Mar 23.
Published in final edited form as: Kidney Int. 2022 Jun 16;102(3):624–639. doi: 10.1016/j.kint.2022.05.021

Table 2: SNP-by-age interaction for cross-sectional eGFR for the 12 identified variants.

For the 12 identified variants, we conducted SNP-by-age interaction analysis for cross-sectional eGFRcrea and eGFRcys in UK Biobank (excluding individuals from decline GWAS; n=351,462 for eGFRcrea, n=351,601 for eGFRcys; main age effect modelled non-linearly, main SNP effect linearly, age centered at 50 years). The interaction term (age effect and SNP effect modelled linearly) was judged at Bonferroni-corrected significance level (P<0.05/12=4.17×10−3). Beta-estimates are in mL/min/1.732 per year and per cross-sectional eGFR-lowering allele (which was equivalent to faster-decline allele for each SNP); significant P-values are stated in bold.

SNPID Locus Name EA/OA SNP x age interaction eGFRcrea
SNP x age interaction eGFRcys
Beta P Beta P
A from GWAS/candidate search for decline (baseline-unadjusted)

rs34882080 UMOD-PDILT a/g −0.043 5.53×10 −22 −0.045 2.37×10 −17
rs77924615 UMOD-PDILT g/a −0.050 2.55×10 −29 −0.054 6.59×10 −25
rs10254101 PRKAG2 t/c −0.009 0.0263 −0.015 9.84×10 −04
rs1028455 SPATA7 t/a −0.014 2.19×10 −04 −0.014 1.06×10 −03

B from GWAS for declineadj, with association for decline (baseline-unadjusted)

rs1458038 FGF5 c/t −0.013 7.11×10 −04 −0.013 3.12×10 −03
rs4930319 OVOL1 c/g −0.015 2.55×10−05 −0.016 1.84×10−04
rs434215 TPPP a/g −0.028 1.02×10 −10 −0.033 5.02×10−11
rs28857283 C15ORF54 g/a −0.010 5.09×10−03 −0.006 0.148
rs13095391 ACVR2B a/c 0.004 0.227 0.002 0.695

C from GWAS for declineadj, without association for decline (baseline-unadjusted)

rs9998485 SHROOM3 a/g −0.004 0.206 −0.009 0.022
rs1047891 CPS1 a/c 0.004 0.228 0.005 0.244
rs2453533 GATM a/c 0.014 9.71×10 −05 0.002 0.722

SNPID=Variant identifier on GRCh37, Locus name=Nearest Gene, EA/OA=Effect allele / other allele, Beta and P=genetic effect and association P-value. The TPPP variant rs434215 is well-imputed in the UK Biobank (imputation quality=0.82).