Chromatin accessibility measured by ATAC-Seq in AAVS1 control
knockouts is shown in black. ATAC-Seq data are shown as normalized read
coverage; samples were normalized using the size factors from DESeq2.
Results from previous CRISPR activation (CRISPRa) screen38 tiling the IL2RA
locus in Jurkat cells is shown in pink. CRISPRa tracks show the
log2 enrichment of guide RNAs in cells expressing high, mid,
or low levels of IL2RA compared to background. Public ChIP-Seq data for
IL2RA regulators in various subsets of human CD4 + T cells
(STAT5A, STAT5B, ETS1, GATA3, MYB) or engineered bulk T cells (IRF4) are
shown in green. ChIP-Seq data are shown as background subtracted binding in
reads per million. ATAC-Seq peaks that were significantly differentially
accessible in each knockout are shown in blue. The location of a matching
binding motif in a significantly differentially accessible peak for each
transcription factor is shown in orange. Where available, public ChIP-Seq
tracks are from either two independent studies or individual donors:
ETS148,81, GATA347, IRF482, MYB83, STAT5A and STAT5B84. chr, chromosome.