Figure 3.

Phylogenetic tree of the Mycobacterium caprae sequences from Almería (human cases and goats) and other provinces (only human cases), Andalusia, 2003–2022 (n = 41)

Phylogenetic tree done with Microreact (https://microreact.org), using the genomic pairwise SNP distances between the isolates. Each dot corresponds to an isolate. Dots surrounded by a ring correspond to human isolates; the colours for the dot indicates which isolates correspond to the farmers, siblings or migrants. Outer rings indicate the isolates from Almería (pink) or from other provinces (green). Isolates are included in groups (grey, groups 1–8), supported on their inclusion in the same branch of the tree.