Table 1. Description of the four cohorts included in XTABLE (Exploring Transcriptomes of Bronchial Lesions).
| GEO accession | PMID | Stages | Progression status known | Number of samples | Sample type | Transcriptome |
|---|---|---|---|---|---|---|
| GSE33479 | 31243362 | Multiple | No | 122 | Whole biopsies | Microarray |
| GSE109743 | 31015447 | Multiple* | Yes | 448 Discovery cohort (197 Bx, 91 Br) Validation cohort (111Bx, 49 Br) |
Whole biopsies and brushings | RNAseq |
| GSE114489 | 29997230 | Dysplasias normal | Yes | 63 | Whole biopsies | Microarray |
| GSE108124 | 30664780 | CIS | Yes | 33 | Microdissected | Microarray |
Bx: biopsies; Br: brushings.
*
This cohort includes neither carcinomas in situ (CIS) nor invasive carcinomas.