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. Author manuscript; available in PMC: 2023 Mar 26.
Published in final edited form as: Cell Rep. 2022 Nov 8;41(6):111590. doi: 10.1016/j.celrep.2022.111590

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Rabbit Anti-ORC2 Antibody This Paper N/A
Rabbit Anti-Elys Antibody This Paper N/A
HRP Rabbit Anti-Histone H3 Antibody Abcam Cat#: ab21054; RRID:AB_880437
Rabbit Anti-phospho-Histone H3 (Ser10) Antibody Sigma-Aldrich Cat#: 06-570; RRID:AB_310177
Rabbit Anti-Histone H2AvD phospho137 Antibody Rockland Cat#: 600-401-914; RRID:AB_828383
Mouse Anti-Nuclear Pore Complex Proteins Antibody (mab414) BioLegend Cat#: 902901; RRID:AB_2565026
Mouse Anti-H2B Antibody Abcam Cat#: ab52484; RRID:AB_1139809
Rabbit IgG Sigma-Aldrich Cat#: I5006; RRID:AB_1163659
Alexa Fluor 568 Goat Anti-Rabbit Antibody ThermoFisher Cat#: A11011; RRID:AB_143157
Alexa Fluor 488 Goat Anti-Mouse Antibody ThermoFisher Cat#: A11029; RRID:AB_2534088
Peroxidase-AffiniPure Donkey Anti-Rabbit Jackson ImmunoResearch Cat#: 712-035-153; RRID:AB_2340639
Bacterial and virus strains
Rosetta 2 (DE3) Competent Cells Novagen Cat#: 71400
Chemicals, peptides, and recombinant proteins
cOmplete Protease Inhibitor Cocktail EDTA-free Roche Cat#: 04693159001
Benzonase ® Nuclease Fisher Scientific Cat#: 70-664-3
GFP Trap ® Magnetic Agarose Chromotek Cat#: gtma-20
SPRIselect Beads Beckman Coulter Cat#: B23317
2× Laemmli Sample Buffer Bio-Rad Cat#: 1610737
Alexa Fluor 555 Azide Invitrogen Cat#: A20012
RNAse A Sigma-Aldrich Cat#: R4875
Proteinase K Sigma-Aldrich Cat#: P4850
Aphidicolin Sigma-Aldrich Cat#: A0781
Normal Goat Serum Sigma-Aldrich Cat#: G9023
Vectashield+DAPI Vector Laboratories Cat#: H-1000
Maxima H Minus Reverse Transcriptase ThermoFisher Scientific Cat#: EP0752
Critical commercial assays
MagExtractor PCR & Gel Clean Up Kit Toyobo Cat#: NPK-601
MEGAscript T7 Transcription Kit ThermoFisher Scientific Cat#: AM1334
4–15% Mini-PROTEAN TGX Stain-Free Protein Gels Bio-Rad Cat#: 4568086
DNA Clean & Concentrator-100 kit Zymo Research Cat# D4029
NEBNext Ultra II DNA Prep Kit for Illumina New England BioLabs Cat#: E7370
ATAC-Seq Kit Active Motif Cat#: 53150
Deposited data
modEncode ChIP-ChIP or ChIP-seq S2 cell data Celniker et al. (2009); Contrino et al. (2012) N/A
ORC2 ChIP-seq peaks in S2 cells Eaton et al. (2011) GSE20887
Nucleoporin peaks in S2 cells Gozalo et al. (2020); Pascual-Garcia et al. (2017) GSE136117; GSE94922
Raw and processed sequencing data This study GSE199896
Processed mass spectrometry data This study ProteomeXchange: PXD033045
Raw western blot images This study Mendeley Data: https://doi.org/10.17632/z4f2tkn4gs.1
Experimental models: Cell lines
Drosophila S2 cells Drosophila Genomics Resource Center Cat#: 181
Experimental models: Organisms/strains
WT: Oregon R flies N/A N/A
ORC2-GFP flies Gift from Shelby Blythe endogenously tagged ORC2
Oligonucleotides
Oligopaint Primers (See Data S1, Table S2) This Study N/A
OligoPaint PCR Amplification Forward Primer: 5′ GCGTTAGGGTGCTTACGTC-3′ This Study N/A
OligoPaint PCR Amplification Reverse Primer: 5′ CACCTCCGTCTCTCACCT-3′ This Study N/A
Oligopaint Fluorescent Secondary Probe covalently lined to Alexa Fluor 488: AAGCACCCTAACGCTTCACGATCCAT This Study N/A
Primers used to generate dsRNA for RNA interference (See Data S1, Table S3) This Study N/A
Recombinant DNA
Plasmid: pLM302 His-MBP-ORC2 This study His-MBP-ORC2 fusion under T7 promoter
Plasmid: pLM302 His-MBP-Elys This study His-MBP-Elys fusion under T7 promoter
Software and algorithms
GraphPad Prism Software https://www.graphpad.com/scientific-software/prism/
FlowJo Software https://www.flowjo.com/
RStudio Software https://www.rstudio.com/
Nikon Elements Software https://www.microscope.healthcare.nikon.com/products/software/nis-elements
Bowtie2 Software http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
Picard Software https://broadinstitute.github.io/picard/
Deeptools Software https://deeptools.readthedocs.io/en/develop/
MACS2 Software https://pypi.org/project/MACS2/
Bedtools Software https://bedtools.readthedocs.io/en/latest/index.html
UCSC Genome Browser Software https://genome.ucsc.edu/
Galaxy Software https://usegalaxy.org/