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. Author manuscript; available in PMC: 2023 Mar 26.
Published in final edited form as: J Proteome Res. 2022 Jul 6;21(9):2104–2113. doi: 10.1021/acs.jproteome.2c00145

Figure 5: Repository DIA proteomic datasets reanalyzed with and without the contaminant protein libraries.

Figure 5:

Various DIA data analysis platforms were used to reanalyze two DIA datasets (human cells: PXD022589; mouse cortex: PXD005573) with (blue) and without contaminant libraries (grey). Contaminant FASTA library and identified contaminant proteins were marked in red in the Venn diagrams and bar graphs.