Table 2.
De novo assembled genes specifically expressed in B. villosa (BRA1896) and associated with plant defense response
| Gene_ID | Log2-fold change | Homolog in A. thaliana | Putative annotation | |
|---|---|---|---|---|
| BRA1896 | BRA1909 | |||
| Trinity_DN1159_c1_g1_i10 | 1.68 | 0.00 | AT1G11310 | Transmembrane domain protein |
| Trinity_DN2585_c0_g1_i2 | 2.68 | 0.00 | AT2G33580 | Receptor-like kinase |
| Trinity_DN1605_c0_g2_i5 | 3.24 | 0.00 | AT2G38470 | WRKY-transcription factor |
| Trinity_DN2365_c0_g1_i5 | 1.22 | 0.29 | AT5G28040 | Leucine zipper transcription factor |
| Trinity_DN46357_c0_g1_i1 | 2.20 | 2.35 | AT1G70130 | Protein kinase |
| Trinity_DN628_c1_g1_i3 | 1.34 | 0.00 | AT5G18370 | Leucine-rich repeat domain receptor |
| Trinity_DN1154_c0_g1_i3 | 1.73 | 0.00 | AT1G61390 | Protein kinase |
| Trinity_DN557_c0_g1_i10 | 2.22 | 3.81 | AT1G15520 | ABC-transporter |
| Trinity_DN5013_c0_g1_i25 | 2.52 | 0.00 | AT3G09830 | Receptor-like kinase |
| Trinity_DN7883_c0_g1_i17 | 1.68 | 0.00 | AT1G74360 | Serine/threonine kinase |
| Trinity_DN5417_c0_g1_i33 | 2.81 | 0.00 | AT5G27420 | Ubiquitin ligase |
| Trinity_DN4012_c0_g1_i4 | 4.94 | 0.00 | AT4G23310 | Cysteine-rich receptor-like protein kinase |
| Trinity_DN21071_c0_g2_i2 | 5.05 | 2.23 | AT2G02220 | Receptor-like protein |
| Trinity_DN1154_c0_g1_i46 | 3.11 | 0.00 | AT1G61390 | Protein kinase |
| Trinity_DN2466_c0_g1_i7 | 1.40 | 0.00 | AT3G05360 | Receptor-like protein |
| Trinity_DN3122_c1_g3_i4 | 1.43 | 0.00 | AT2G43590 | Chitinase protein |
| Trinity_DN242_c0_g1_i19 | 1.30 | 0.00 | AT1G10170 | Transcription repressor |
| Trinity_DN4251_c0_g1_i18 | 5.13 | 0.50 | AT1G02305 | Capase |
| Trinity_DN7129_c0_g1_i1 | 1.89 | 0.00 | AT4G02420 | Protein kinase |
| Trinity_DN651_c3_g2_i2 | 2.48 | 0.00 | AT4G17490 | Ethylene response factor |
| Trinity_DN1154_c0_g1_i11 | 3.06 | 0.00 | AT1G61380 | Receptor-like kinase |
| Trinity_DN12674_c0_g2_i4 | 7.19 | 0.00 | AT2G40140 | Zinc finger family protein |
| Trinity_DN1095_c0_g1_i27 | 1.60 | − 0.47 | AT1G19180 | Nuclear-localized protein |
| Trinity_DN1554_c0_g1_i16 | 2.55 | 1.87 | AT2G37940 | Inositol phosphorylceramide synthase |
| Trinity_DN3122_c1_g3_i1 | 1.81 | 0.49 | AT2G43590 | Chitinase protein |
| Trinity_DN6286_c0_g1_i18 | 3.44 | 4.00 | AT3G04720 | Chitin-binding protein |
| Trinity_DN8160_c0_g1_i1 | 1.02 | − 0.54 | AT2G37040 | Phenylalanine ammonia-lyase |
| Trinity_DN1605_c0_g2_i6 | 3.01 | − 2.37 | AT2G38470 | WRKY-transcription factor |
| Trinity_DN770_c0_g1_i6 | 2.73 | 0.00 | AT2G03760 | Sulfotransferase |
| Trinity_DN4012_c0_g1_i2 | 1.94 | − 3.39 | AT4G23310 | Cysteine-rich receptor-like protein kinase |
| Trinity_DN624_c0_g1_i2 | 1.24 | 0.00 | AT5G03320 | Protein kinase |
| Trinity_DN1627_c0_g2_i4 | 2.34 | 0.00 | AT2G32240 | PAMP-induced protein |
| Trinity_DN787_c0_g3_i1 | 4.25 | 0.00 | AT2G32680 | Receptor-like protein |
| Trinity_DN882_c0_g2_i3 | 1.46 | 0.00 | AT2G37040 | Phenylalanine ammonia-lyase |
| Trinity_DN10838_c0_g1_i8 | 1.62 | 1.45 | AT4G34131 | UDP-glucosyl transferase |
| Trinity_DN159_c0_g3_i18 | 3.00 | − 0.89 | AT2G21660 | Glycine-rich RNA binding protein |
| Trinity_DN590_c0_g1_i10 | 2.36 | 0.00 | AT3G05200 | Putative ring-h2 zinc finger protein |
| Trinity_DN2969_c0_g1_i1 | 3.51 | 0.00 | AT1G80840 | WRKY-transcription factor |
| Trinity_DN5502_c0_g1_i19 | 1.13 | − 0.47 | AT4G25030 | Plastid localized protein |
| Trinity_DN871_c0_g1_i3 | 1.79 | 0.00 | AT5G64120 | Peroxidase |
| Trinity_DN3122_c1_g3_i2 | 1.57 | 1.45 | AT2G43590 | Chitinase protein |
| Trinity_DN1154_c0_g1_i24 | 2.59 | 0.00 | AT1G61390 | Protein kinase |
| Trinity_DN4012_c0_g3_i1 | 2.34 | 0.43 | AT4G23180 | Receptor-like protein |
| Trinity_DN839_c0_g1_i16 | 2.61 | 0.00 | AT5G06320 | Disease resistance gene |
| Trinity_DN1154_c0_g1_i51 | 1.92 | 0.00 | AT1G61380 | Receptor-like kinase |
| Trinity_DN1607_c1_g4_i1 | 1.41 | 0.00 | AT5G47220 | Ethylene response factor |
| Trinity_DN787_c0_g3_i2 | 2.24 | 0.00 | AT2G32680 | Receptor-like protein |
| Trinity_DN1900_c2_g1_i4 | 1.22 | 0.66 | AT5G48380 | Receptor-like kinase |
| Trinity_DN1607_c1_g6_i1 | 3.30 | − 2.70 | AT2G44840 | Ethylene response factor |
| Trinity_DN1095_c0_g1_i8 | 1.02 | 0.00 | AT1G19180 | Nuclear-localized protein |
| Trinity_DN686_c0_g1_i20 | 1.64 | 0.88 | AT1G80820 | Cinnamoyl CoA-reductase |
| Trinity_DN7883_c0_g1_i10 | 2.06 | 0.00 | AT1G74360 | Serine/threonine kinase |
| Trinity_DN9783_c0_g1_i3 | 1.62 | − 0.08 | AT1G58602 | Disease resistance protein |
| Trinity_DN1605_c0_g3_i6 | 3.52 | − 0.47 | AT2G38470 | WRKY-transcription factor |
| Trinity_DN21071_c0_g2_i1 | 1.84 | 0.45 | AT2G02220 | Receptor-like protein |
| Trinity_DN1154_c0_g1_i45 | 1.79 | 0.00 | AT1G61390 | Protein kinase |
| Trinity_DN1795_c0_g2_i9 | 1.61 | 0.00 | AT3G09980 | Microtubules-associated protein |
| Trinity_DN1605_c0_g3_i1 | 5.41 | − 0.47 | AT2G38470 | WRKY-transcription factor |
Significant log2-fold change is marked in bold (P adj. ≤ 0.05). BRA1909 = B. oleracea