Table 3.
Pathogenesis-related (PR) genes in the identified QTLs in the B. oleracea TO1000 reference genome
| Chr | Position [bp] | Gene_ID | Log2-fold change | Homolog in A. thaliana | Putative annotation | |
|---|---|---|---|---|---|---|
| BRA1896 | BRA1909 | |||||
| pQTLa | ||||||
| C1 | 27,090,180–27,094,365 | Unigene.2258 | 0.56 | − 0.27 | AT1G60060 | ET receptor |
| C1 | 27,961,418–27,964,840 | Unigene.2305 | 0.28 | − 0.05 | AT5G09890 | Protein kinase |
| C1 | 28,166,345–28,169,898 | Unigene.2315 | 1.23 | − 0.14 | AT1G61100 | Disease resistance protein |
| C1 | 28,665,765–28,668,996 | Unigene.2328 | 1.37 | 0.28 | AT1G61380 | Receptor kinase |
| C1 | 28,684,815–28,689,499 | Unigene.2332 | 0.82 | 0.20 | AT1G61490 | Protein kinase |
| C1 | 28,775,666–28,778,647 | Bo1g098240 | 1.56 | − 0.30 | AT1G61590 | Protein kinase |
| l2QTLb | ||||||
| C1 | 14,675,631–14,677,152 | Unigene.1621 | 1.52 | − 0.68 | AT4G32480 | Sugar phosphate exchanger |
| C1 | 15,950,476–15,952,442 | Unigene.1707 | 2.41 | 0.64 | AT4G16260 | Beta-1,3-endoglucanase |
| C1 | 16,945,305–16,951,076 | Bo1g057070 | 3.77 | 0.15 | AT5G38340 | Disease resistance protein |
| C1 | 17,209,332–17,213,228 | Bo1g057280 | 1.25 | 0.02 | AT4G14940 | Copper amine oxidase |
| l3QTLb | ||||||
| C7 | 47,411,341–47,413,075 | Unigene.27801 | 0.80 | 0.03 | AT4G37150 | Methyl salicylate esterase |
| C7 | 47,471,969–47,474,259 | Unigene.27814 | 1.13 | 0.79 | AT4G36900 | ERF/AP2 transcription factor |
| C7 | 47,507,341–47,508,305 | Unigene.27815 | 1.61 | 2.67 | AT4G37290 | PAMP-induced peptide |
| C7 | 47,591,970–47,593,598 | Unigene.27828 | 0.42 | − 0.07 | AT4G37610 | TAZ-domain protein |
| C7 | 47,645,847–47,647,163 | Bo7g118680 | 2.05 | − 1.10 | AT4G37690 | Glycosyltransferase |
| p1QTLb1/p3QTLb1 | ||||||
| C3 | 2,464,575–2,468,509 | Unigene.7573 | 0.86 | − 0.92 | AT5G11250 | TIR-NBS-LRR protein |
| C3 | 2,505,710–2,510,061 | Unigene.7579 | 0.33 | − 1.22 | AT5G11510 | MYB-transcription factor |
| C3 | 2,590,387–2,591,964 | Unigene.7588 | 2.17 | 0.76 | AT1G05890 | RING/U-box superfamily protein |
| C3 | 2,678,919–2,679,799 | Unigene.7604 | 2.12 | 0.21 | NA | NA |
| C3 | 2,925,738–2,929,237 | Bo3g008890 | 2.86 | − 2.40 | AT5G12920 | WD40 repeat-like superfamily protein |
| p2QTLb2/p3QTLb2 | ||||||
| C7 | 42,428,839–42,430,131 | Bo7g108060 | 1.22 | − 0.33 | AT4G22680 | MYB-domain protein |
| C7 | 42,449,575–42,451,152 | Unigene.27187 | 0.63 | 0.00 | AT4G22690 | Cytochrome P450 protein |
| C7 | 42,731,387–42,734,266 | Unigene.27214 | 1.16 | − 0.57 | AT4G23130 | Cysteine-rich receptor-like kinase |
| C7 | 42,737,429–42,739,520 | Unigene.27215 | 3.29 | 0.94 | AT4G23130 | Cysteine-rich receptor-like kinase |
| C7 | 42,744,618–42,745,142 | Unigene.27216 | 4.72 | 2.52 | AT4G23130 | Cysteine-rich receptor-like kinase |
| C7 | 42,793,701–42,796,988 | Unigene.27221 | 1.18 | 0.49 | AT4G23230 | Cysteine-rich receptor-like kinase |
| C7 | 42,800,478–42,803,336 | Unigene.27222 | 2.39 | 0.42 | AT4G23240 | Cysteine-rich receptor-like kinase |
| C7 | 42,926,260–42,931,088 | Unigene.27237 | 2.26 | 0.51 | AT4G23515 | TIR-domain protein |
| C7 | 42,967,394–42,969,656 | Unigene.27241 | 0.99 | − 0.01 | AT4G23570 | Protein SGT1 homolog A |
| C7 | 43,082,687–43,083,634 | Unigene.27253 | 3.96 | 0.79 | AT4G23720 | Transmembrane protein (DUF119) |
| C7 | 43,297,480–43,298,989 | Bo7g109370 | 2.30 | − 1.88 | AT4G24180 | Thaumatin-like protein |
| C7 | 43,317,954–43,319,839 | Unigene.27284 | 0.82 | 0.06 | AT4G24240 | Calmodulin-binding protein |
| C7 | 43,411,597–43,412,228 | Unigene.27297 | 2.74 | − 0.03 | AT4G30400 | RING/U-box superfamily protein |
| C7 | 43,515,228–43,516,110 | Unigene.27316 | 2.50 | 1.12 | AT4G24960 | HVA22-like protein |
| C7 | 43,568,299–43,569,252 | Unigene.27323 | 2.08 | − 1.18 | AT4G25130 | Methionine sulfoxide reductase |
| C7 | 43,865,115–43,870,847 | Bo7g110600 | 2.22 | − 1.36 | AT4G25960 | P-glycoprotein |