Table 5.
Server | Parameter | MPXV-2-TLR2 | MPXV-2-TLR4 | MPXV-2-HLA-A*02:01 | MPXV-2-HLA-DRB1*01:01 | MPXV-5-TLR2 | MPXV-5-TLR4 | MPXV-5-HLA-A*02:01 | MPXV-5-HLA-DRB1*01:01 |
---|---|---|---|---|---|---|---|---|---|
ClusPro 2.0 | Center | -953.1 | -1088 | -998.6 | -1092.7 | -1203.8 | -1166.8 | -875.8 | -1224.5 |
Lowest Energy | -1110.3 | -1473.3 | -1033.6 | -1330.8 | -1203.8 | -1261.8 | -1037.5 | -1224.5 | |
HADDOCK 2.4 | HADDOCK score | -171.0 +/- 0.9 | -242.1 +/- 3.7 | -378.0 +/- 3.4 | -676.9 +/- 2.4 | -275.6 +/- 3.2 | -306.2 +/- 1.6 | -423.8 +/- 7.2 | -675.7 +/- 1.7 |
Cluster size | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | |
RMSD from the overall lowest-energy structure | 0.6 +/- 0.4 | 0.6 +/- 0.3 | 0.6 +/- 0.3 | 0.6 +/- 0.3 | 0.6 +/- 0.4 | 0.6 +/- 0.3 | 0.6 +/- 0.3 | 0.6 +/- 0.3 | |
Van der Waals energy | -84.8 +/- 2.3 | -115.0 +/- 2.6 | -176.2 +/- 2.2 | -304.9 +/- 6.4 | -122.2 +/- 1.4 | -138.5 +/- 1.8 | -186.7 +/- 3.0 | -316.1 +/- 2.4 | |
Electrostatic energy | -108.1 +/- 6.0 | -297.5 +/- 22.0 | -589.8 +/- 25.1 | -1254.2 +/- 23.7 | -364.6 +/- 11.1 | -323.4 +/- 35.9 | -703.2 +/- 17.4 | -1154.4 +/- 21.3 | |
Desolvation energy | -64.6 +/- 3.3 | -67.6 +/- 2.2 | -83.7 +/- 2.0 | -121.1 +/- 1.4 | -80.4 +/- 1.4 | -103.0 +/- 5.7 | -96.5 +/- 6.8 | -128.8 +/- 4.2 | |
Restraints violation energy | 0.0 +/- 0.0 | 0.0 +/- 0.0 | 0.0 +/- 0.0 | 0.0 +/- 0.0 | 0.0 +/- 0.0 | 0.0 +/- 0.0 | 0.0 +/- 0.0 | 0.0 +/- 0.0 | |
Buried Surface Area | 2557.1 +/- 16.1 | 3619.9 +/- 65.0 | 5011.4 +/- 65.8 | 7923.8 +/- 34.6 | 3871.2 +/- 70.5 | 4361.5 +/- 75.1 | 5447.7 +/- 98.5 | 8418.8 +/- 83.3 | |
Z-Score | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
PRODIG | ΔG (kcal/mol) | -9.4 | -19.1 | -11.9 | -11.6 | -16.1 | -16.5 | -12.9 | -12.3 |
Kd (M) at 25.0 °C | 1.30E-07 | 1.00E-14 | 1.80E-09 | 2.90E-09 | 1.70E-12 | 7.70E-13 | 3.50E-10 | 8.80E-10 | |
PDBsum | Number of hydrogen bonds | 6 | 11 | 12 | 16 | 12 | 18 | 12 | 12 |
Number of salt Bridges | 0 | 2 | 1 | 6 | 3 | 3 | 3 | 5 |
ΔG, binding energy; Kd, dissociation constant.