Table 1.
Table describing the base-pair contribution of fosmid, capture, and whole-genome sequence to the final hybrid assembly.
| Sample | Library | Population | Concordant Fosmids Sequenced | Discordant Fosmids Sequenced | Bases added using fosmids (bp) | Bases added using WGS (bp) | Bases added using capture (bp) | Number of gaps | Size of gaps (KB) | Gap as percent of total assembly | Total assembly sequence | Fosmid as percent of total assembly |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NA18956 | ABC9 | Japanese | 52 | 0 | 1279669 | 0 | 576878 | 0 | 0 | 0.00% | 1856547 | 68.90% |
| NA19240 | ABC10 | Yoruban | 94 | 7 | 1626664 | 238081 | 0 | 0 | 0 | 0.00% | 1864745 | 87.20% |
| NA18555 | ABC11 | Chinese | 94 | 5 | 1562873 | 0 | 299058 | 0 | 0 | 0.00% | 1861931 | 83.90% |
| NA12878 | ABC12 | European | 68 | 2 | 981527 | 42228 | 0 | 7 | 763.5 | 74.58% | 1023755 | 95.90% |
| NA19129 | ABC13 | Yoruban | 91 | 4 | 1599736 | 0 | 226944 | 3 | 10.6 | 0.58% | 1826680 | 87.60% |
| NA12156 | ABC14 | European | 82 | 6 | 1579363 | 0 | 62013 | 5 | 183 | 11.15% | 1641376 | 96.20% |