Table 1.
Overexpression and correlation of APOBEC3s with mutation burden across cancers
Cancer type | APOBEC3(s) overexpressed* | Expression type* | Correlated tumor mutation burden(s)** | References |
---|---|---|---|---|
Multiple | 3A, 3B*, 3F, and 3G | mRNA* | APOBEC3-induced | [27] |
Adrenal | 3B | mRNA* and protein | Overall | [44] |
B-cell lymphoma | 3B and 3C | mRNA | N/A | [45] |
Bile duct | 3A* and 3B (No healthy tissue control) | mRNA | APOBEC3-induced | [43] |
Bladder | 3B* | Protein | N/A | [35] |
3B | mRNA | Not detected | [27] | |
3B | mRNA | N/A | [34] | |
3A* and 3B* | mRNA* | APOBEC3-induced | [1, 46] | |
3B1 | mRNA and protein | N/A | [1] | |
Breast | 3A*, 3B*, and 3H | mRNA* | APOBEC3-induced | [27] |
3B | mRNA | N/A | [34] | |
3B* | mRNA* | APOBEC3-induced, overall | [22] | |
3A* and 3B | mRNA* | APOBEC-induced | [47] | |
3A*, 3B*, and C3-H | mRNA* | APOBEC3-induced, overall | [48] | |
Cervical | 3B | mRNA | N/A | [34] |
Esophageal | 3B* | mRNA and protein* | APOBEC3-induced in PIK3CA | [39] |
Gastric | 3B* | Protein* | Overall | [37] |
3B | mRNA and protein | N/A | [38] | |
Glioma | 3B, 3C, 3D, 3F, 3G, 3H | mRNA* | Overall | [51] |
Head and neck | 3B | mRNA | N/A | [34] |
Kidney | 3B | mRNA | N/A | [34] |
Leukemia | 3A | mRNA | N/A | [52] |
Lung | 3B* | mRNA* | APOBEC3-induced | [27] |
3B* | mRNA* | APOBEC3-induced, overall | [53] | |
3B* | mRNA* | APOBEC3-induced | [54] | |
3B | mRNA | N/A | [34] | |
3B | mRNA | N/A | [36] | |
Nasopharyngeal | 3B | Protein | N/A | [55] |
Ovarian | 3B | Protein | N/A | [42] |
3B | mRNA* and protein | Overall | [41] | |
3B* | mRNA* | Overall | [56] | |
Pancreatic | 3G | mRNA and protein | N/A | [49] |
Penile | 3A (In subset) | Protein | N/A | [57] |
Prostate | 3B | mRNA | N/A | [34] |
Skin | 3B | mRNA | N/A | [34] |
Uterus | 3B | mRNA | N/A | [34] |
*Indicates that a correlation was detected between the specified APOBEC3(s) and mutation burden(s). Some papers with both protein and mRNA expression only tested for correlations with one expression metric, so lack of an asterisk may indicate no relevant data rather than lack of statistical association
**N/A indicates no relevant data, not lack of statistical association