Table A1.
Gene | Gene Name | Primer | Sequence | Primer Length [bp] | Product Length [bp] | Efficiency [%] | Source | Primer Design | Primer Concen-tration | R2 |
---|---|---|---|---|---|---|---|---|---|---|
Hif1a | Hypoxia inducible factor 1 subunit alpha |
Forward | TCAAGCAGCAGGAATTGGAAC | 21 | 181 | 95 | NCBI Primer- BLAST |
Exon junction | 400 nM | 0.99 |
Reverse | CTCATCCATTGACTGCCCCA | 20 | ||||||||
s100b | S100 calcium binding protein B |
Forward | GGTGACAAGCACAAGCTGAAG | 21 | 91 | 104 | NCBI Primer- BLAST |
Exon junction | 400 nM | 0.97 |
Reverse | CTTCCTGCTCCTTGATTTCCTCCA | 24 | ||||||||
eno2 | Enolase 2 | Forward | AGGTGGATCTCTATACTGCCAAA | 23 | 98 | 96 | PrimerBank ID14290500a1 |
Intron Inclusion | 200 nM | 0.99 |
Reverse | GTCCCCATCCCTTAGTTCCAG | 21 | ||||||||
ICAM-1 | Intercellular adhesion | Forward | GTGGGTCGAAGGTGGTTCTT | 20 | 188 | 105 | NCBI Primer- BLAST |
Exon junction | 400 nM | 1 |
molecule 1 | Reverse | CCGAGGACCATACAGCACG | 19 | |||||||
VCAM-1 | Vascular cell adhesion molecule 1 |
Forward | CAAAAAGGGACGATTCCGGC | 20 | 187 | 123 | NCBI Primer- BLAST |
Intron Inclusion | 400 nM | 0.96 |
Reverse | GTTTCGGGCACATTTCCACA | 20 | ||||||||
Nrf2 | Nuclear factor, erythroid 2 like 2 |
Forward | AGCAGGACATGGAGCAAGTT | 20 | 96 | 117 | NCBI Primer- BLAST |
Intron Inclusion | 400 nM | 0.98 |
Reverse | CAGCGGTAGTATCAGCCAGC | 20 | ||||||||
Tnf | Tumor necrosis factor | Forward | CCTGTAGCCCACGTCGTAG | 19 | 148 | 120 | PrimerBank ID133892368c3 |
Intron Inclusion | 500 nM | 0.98 |
Reverse | GGGAGTAGACAAGGTACAACCC | 22 | ||||||||
Il1β | Interleukin 1 beta | Forward | ATGAAAGACGGCACACCCAC | 20 | 175 | 129 | NCBI Primer- BLAST |
Intron Inclusion | 400 nM | 0.99 |
Reverse | GCTTGTGCTCTGCTTGTGAG | 20 | ||||||||
Il6 | Interleukin 6 | Forward | GAGGATACCACTCCCAACAGACC | 23 | 141 | 106 | Aachen 078 | Intron Inclusion | 400 nM | 0.99 |
Reverse | AAGTGCATCATCGTTGTTCATACA | 24 | ||||||||
Tlr2 | Toll like receptor 2 | Forward | ACCTGAGAATGATGTGGGCG | 20 | 202 | 103 | NCBI Primer- BLAST |
Non-Exon-junction | 400 nM | 0.99 |
Reverse | CATTTGCCCGGAACGAAGTC | 20 | ||||||||
Ppia | Peptidylprolyl isomerase A |
Forward | GGCAAATGCTGGACCAAAC | 19 | 110 | 98 | Sundaram et al., PLoS one 2019. |
Intron Inclusion | 400 nM | 0.99 |
Reverse | CATTCCTGGACCCAAAACG | 19 | ||||||||
s7 | Ribosomal protein S7 | Forward | AAAGTTCAGTGGCAAGCACG | 20 | 99 | 99 | NCBI Primer- BLAST |
Intron Inclusion | 400 nM | 0.99 |
Reverse | CTGGGGCGCTTCTGCTTATT | 20 |