Table 1.
Primer sequences and amplification programs.
Gene | Primer Sequences | Conditions | Product Size (bp) |
---|---|---|---|
IL-6 | 5′-ATGAACTCCTTCTCCACAAGCGC-3′ 5′-GAAGAGCCCTCAGGCTGGACTG-3′ |
5″ at 95 °C, 13″ at 56 °C, 25″ at 72 °C for 40 cycles | 628 |
IL-8 | 5′-ATGACTTCCAAGCTGGCCGTG-3′ 5′-TGAATTCTCAGCCCTCTTCAAAAACTTCTC-3′ |
5″ at 94 °C, 6″ at 55 °C, 12″ at 72 °C for 40 cycles | 297 |
IL-1α | 5′-CATGTCAAATTTCACTGCTTCATCC-3′ 5′-GTCTCTGAATCAGAAATCCTTCTATC-3′ |
5″ at 95 °C, 8″at 55 °C, 17″ at 72 °C for 45 cycles | 421 |
TNF-α | 5′-CAGAGGGAAGAGTTCCCCAG-3′ 5′-CCTTGGTCTGGTAGGAGACG-3′ |
5″ at 95 °C, 6″ at 57 °C, 13″ at 72 °C for 40 cycles | 324 |
TGF-β | 5′-CCGACTACTACGCCAAGGAGGTCAC-3′ 5′-AGGCCGGTTCATGCCATGAATGGTG-3′ |
5″ at 94 °C, 9″ at 60 °C, 18″ at 72 °C for 40 cycles | 439 |
HBD-2 | 5′-GGATCCATGGGTATAGGCGATCCTGTTA-3′ 5′-AAGCTTCTCTGATGAGGGAGCCCTTTCT-3′ |
5″ at 94 °C, 6″ at 63 °C, 10″ at 72 °C for 50 cycles | 198 |
Occludin | 5′-TCAGGGAATATCCACCTATCACTTCAG-3′ 5′-CATCAGCAGCAGCCATGTACTCTTCAC-3′ |
10″ at 95 °C, 45″ at 60 °C for 40 cycles | 188 |
Zonulin-1 | 5′-AGGGGCAGTGGTGGTTTTCTGTTCTTTC-3′ 5′-GCAGAGGTCAAAGTTCAAGGCTCAAGAGG-3′ |
10″ at 95 °C, 45″ at 60 °C for 40 cycles | 217 |
Claudin-1 | 5′-CTGGGAGGTGCCCTACTTTG-3′ 5′-ACACGTAGTCTTTCCCGCTG-3′ |
1″ at 95 °C, 30″ at 60 °C, 20″at 72 °C for 40 cycles | 128 |