Table 1.
General description and quality metrics for genome assemblies of four pinniped species used in this study. MP = mate pair library, PE = paired-end library.
| Baikal Seal (PSIB) | Gray Seal (HGRY) |
Spotted Seal (PLAR) | Harbor Seal (PVIT) |
|
|---|---|---|---|---|
| IUCN Red List Category 1 |
LC | LC | LC | LC |
| Gender | male | male | female | female |
| Assembly source | DNAzoo | DNAzoo | DNAzoo | DNAzoo |
| Assembly accession/reference | - | Halichoerus_grypus_HiC | Phoca_largha_HiC | GSC_HSeal_1.0_HiC |
| Sequencing/assembly approach | MP + HiC | Overlapping PE + HiC | Overlapping PE + HiC | Linked reads + HiC |
| 2n | 32 | 32 | 32 | 32 |
| C-scaffolds | 16 | 16 | 16 | 16 |
| Scaffold N50, Mbp | 151.5 | 141.6 | 142.1 | 152 |
| Number of scaffolds | 146,408 | 388,387 | 249,399 | 5311 |
| Total genome length, Gbp | 2.35 | 2.4 | 2.36 | 2.36 |
| C-scaffolds length, Gbp | 2.29 | 2.16 | 2.16 | 2.32 |
1 IUCN Red List category: LC—least concern.