Table 1.
Gene 1 | Primer Pairs 2 | PCR Cycling Program (T-Time) | |||||
---|---|---|---|---|---|---|---|
Initial Denaturation | Amplification | Final Extension | |||||
N° of Cycles | Denaturation | Annealing | Extension | ||||
Fungal isolates | |||||||
ITS | ITS4/ITS5 | 94 °C-3 min | 35 | 94 °C-30 s | 48 °C-30 s | 72 °C-45 s | 72 °C-10 min |
TUB | Bt2a/Bt2b | 95 °C-3 min | 35 | 94 °C-15 s | 55 °C-15 s | 72 °C-1 min | 72 °C-7 min |
LSU | LR0R/LR7 | 95 °C-3 min | 35 | 94 °C-15 s | 52 °C-15 s | 72 °C-1 min | 72 °C-7 min |
Bacterial isolates | |||||||
16S rDNA | 27F/1492R | 94 °C-3 min | 30 | 94 °C-30 s | 55 °C-30 s | 72 °C-1 min | 72 °C-10 min |