TABLE 5.

Main Effect QTL positions for C₁ population.

Population	Location & year	QTL	LG	Peak	Marker interval	AE	LOD	PVE
C1	Lincoln 2012	C1L12_t50	SB_05	179	S5_60005980/S5_61140055	−1.0766	4.22	9.95
		C1L12_t1	SB_05	157	S5_5516624/S59163058	−2.83	3.06	22.21
C1	Havelock 2012	C1H12_t2	SB_09	89	S9_47992822/S9_50145670	0.9443	3.1	7.25
	Havelock 2013	C1H13_gmax	SB_09	177	S9_58093202/S9_58617556	0.026	2.46	6.43
	Lincoln 2013	C1L13_t1	SB_05	5	S5_1924092/S5_6481183	2,719	4.33	10.71
		C1 _L13_t1	SB_04	160.5	S4_60722837/S4_61070562	−0.1975	2.51	5.38
		C1L13_U8416	SB_01	132.5	S1_56222011/S1_56732599	−16.448	4.89	12.4
		C1L13_U8416	SB_01	172.5	S1_59686307/S1_561692304	12.67	2.9	7.18
		C1L13_t10	SB_05	82.5	S5_42094644/S5_36766036	−11.35	2.5	6.56
C1	Greenhouse	C1GH_spad	SB_2.1	132	S2_56966489/S2_57163895	−1.08	3.2	7.79
		C1GH_shtww	SB_05	114	S2_56966489/S5_52980293	−0.075	3.01	8.34
		C1_GH_spad	SB_09	89	S9_49265379/S9-50145670	0.96	2.56	6.21
		C1GH_rootl	SB_06	216	S6_60974841/S6_61465370	0.42	2.44	6.04
C1	Cold Chamber	C1CR_shootdw	SB_2.2	77	S2_65997316/S2_76002197	−0.11	2.76	15.45
		C1CR_rootdw	SB_2.2	50	S2_61131482/S2_65997316	0.07	2.6	5.41
C1	Cold Chamber	C1coldgerm_t50	SB_2.2	69	S2_65997316/S2_76002197	−21.5	2.7	19.1

Summary of main-effect QTL, positions in the CT19 x Tx430 RIL, population (n = 240) from chilling stress tolerance experiments. QTL, positions (Peak).

^a -LOD, flanking markers, additive effects (AE) and percent of explained phenotypic variance (PVE).