Skip to main content
. 2023 Mar 15;14:1129460. doi: 10.3389/fgene.2023.1129460

TABLE 6.

Main effect QTL positions for C2 population.

Population Location & year QTL LG Peak Marker interval AE LOD PVE
C2 Lincoln 2013 C2L13_u8416 SB_03 51 S3_554424017/S3_56775524 −48.41 3.01 9.63
C2L13_t4 SB_07 192 S7-7490519/S7_7081933 37.46 2.88 9.42
C2L13_gmax SB_07 39 S7_60934659/S7_6086535 −0.037 2.83 8.3
C2L13_u8416 SB_09 15 S9_2391494/S9_2384362 −43.99 2.54 7.96
C2L13_gmax SB_08 0 S8_3115611/S8_306121 0.0375 2.51 8.38
Lincoln 2014 C2C14_s SB_06 30 S6_39193351/S6_39192899 −0.23 2.6 7.52
Lincoln 2014 C2H14_mgt SB_04 12 S4_567982/S4_6153781 −6.66 3.15 7.8
C2H14_t4 SB_09 6 S9_58415193/S9_57983599 9.43 2.75 6.99
C2H14_mgt SB_01 8 S1_2451047/S1_3687838 6.43 2.73 7.11
C2H14_u8416 SB_03 71 S4_53080797/S4_52932182 13.02 2.59 6.81
C2H14_t50 SB_01 4 S1_445405/S1_1177847 6.68 2.49 6.86
C2 Lincoln 2013 C2L13_s SB_09 33 S9_1313053/S9_1191729 0.053 10.25 30.34
C2L13_emp SB_09 36 S9_1191729/S9_1313053 0.062 5.25 12.41
C2L13_t50 SB_09 36 2.96 4.7 11.53
C2l13_s SB_09 13 S9_2487908/S9_2391494 −0.3433 4.77 12.78
C2L13_t50 SB_2.2 36 S2_69096627/S2_68759020 2.19 2.7 6.26
C2l13_s SB_07 60 S7-58245013/S7_58174649 −0.25 2.51 6.49
C2 Havelock 2014 C2H14_emp SB_09 36 S9_56384255/S9_56681125 0.0523 2.97 6.67
C2H14_s SB_06 30 S6_39193351/S6_39192899 −0.023 2.5 7.7
C2 Greenhouse C2GH_stmdw SB_01 7 S1_117847/s1_2451047 0.054 4.29 26.52
C2GH_rtdw SB_2.2 123 S2_61680161/S2_61466242 −0.053 3.95 26.31
C2GH_stml SB_05 0 S5_16321292/S2_61466242 −1.77 2.85 17.33
C2GH_rtl SB_03 24 S3_58765030/S3_58411388 −0.5 2.8 19.1
C2GH-rtww SB_04 66 S4_50951365/S4_50562560 −0.095 2.68 19.27
C2GH_stml SB_1.2 16 S1_55581071/S1_52448063 −1.89 2.58 19.89
C2 Cold Room C2CR_rtl SB_04 131 S4_5093408/S4_5093408 −1.16 7.38 28.06
C2CR_stmdw SB_03 25 S3_58411388/S3_58345905 −0.004 3.49 13.52
C2CR_rtl SB_06 31 S6_39193351/S6_39192899 0.624 2.79 8.65
C2CR_stmww SB_1.2 1 S1_56849548/S1_56871988 0.033 2.51 9.07
C2 Germination C2germ_t50 SB_02 69 S2_65997316/S2_76002197 −21.49 2.6 19.06
(coldroom) C2germ_t4 SB_02 71 S2_65997316/S2_76002197 −24.92 2.52 16.79

Summary of main-effect QTL, positions in the M81 E x ISCV700 RIL, population (n = 183) from chilling stress tolerance experiments. QTL, positions (Peak).

a

-LOD, flanking markers, additive effects (AE) and percent of explained phenotypic variance (PVE).