KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Chemicals | ||
20x NuPAGE MES Puffer | Invitrogen | NP0002 |
2-Mercapthoethanol | GIBCO | 3130010 |
4x NuPage LDS loading buffer | Invitrogen | NP0007 |
ACK lysis buffer | GIBCO | A1049201 |
Alexa Fluor 647-conjugated Cholera Toxin B | Life Technologies | C34778 |
anti-CD14+ coated beads | Miltenyi Biotech | 130-050-201 |
Bafilomcyin A1 | Abcam | ab120497 |
Bovine serum albumin | AppliChem | A1391.0500 |
Calcofluor white | Sigma-Aldrich | 18909 |
Calmodulin inhibitor W7 | Sigma-Aldrich | A3281 |
CheLuminate-HRP PicoDetect | AppliChem | A3417,1200 |
Cholesterol | Sigma-Aldrich | C8667 |
DMEM | GIBCO | 11960044 |
DMSO | VWR | 1029500500 |
Fetal bovine serum | GE Healthcare Life Sciences | SV30160.03. |
Fluo-4 | Life Technologies | F10473 |
Fluorescein isothiocyanate | Sigma-Aldrich | F7250 |
Gentamicin sulfate | GIBCO | 15750060 |
GM-CSF | Miltenyi Biotec | 130-093-862 |
HEPES (1M) | GIBCO | 15630056 |
Histopaque®-1077 | Sigma-Aldrich | 10771 |
Human serum | Sigma-Aldrich | H3667 |
Lipofectamin 2000 | Life Technologies | 11668019 |
L-Leucine methyl ester hydrochloride (LLOMe) | Sigma-Aldrich | L1002 |
LysoTracker Red DND-99 | Life Technologies | L7528 |
M-CSF | Peprotech | 315-02 |
Methyl-β-cyclodextrin | Sigma-Aldrich | C4555 |
Normal goat serum | Invitrogen | 01-6201 |
N-pentadecanoyl-D-ejyfhro-sphingosine | Biotrend | 2037 |
pHRodo | Invitrogen | P36011 |
RPMI-1640 | GIBCO | 21875034 |
siRNA | Santa Cruz Biotechnology | N/A |
Sodium bicarbonate | GIBCO | 25080094 |
Sodium dodecyl sulfate | Merck | 817034 |
Ultraglutamine | GIBCO | 35050061 |
Antibodies | ||
primary | ||
Rabbit anti-ATP6V1B2 | Abcam | ab73404; RRID:AB_1924799 |
Rabbit anti-p47phox | Santa Cruz Biotechnology | sc-14015; RRID:AB_2150289 |
Rabbit anti-Flotillin-1 | Santa Cruz Biotechnology | sc-25506; RRID:AB_2106567 |
Goat anti-Flotillin-1 | Abcam | ab13493; RRID:AB_2294271 |
Mouse anti-Flotillin-1 | BD Biosciences | 610820; RRID:AB_398139 |
Mouse anti-Flotillin-2 | BD Biosciences | 610384; RRID:AB_610384 |
Rabbit anti-Caveolin-1 | Cell Signaling Technology | 3267; RRID:AB_2275453 |
Rabbit anti-Caveolin-2 | Abcam | ab133484 |
Rabbit anti-GAPDH | Cell Signaling Technology | 2118; RRID:AB_561053 |
Rabbit anti-CHMP4B | Abcam | ab105767; RRID:AB_10858466 |
Rabbit anti-Galectin 3 | Santa Cruz Biotechnology | sc-515582 |
secondary | ||
Goat anti-rabbit Alexa Fluor 647 | Cell Signaling Technology | 4414; RRID:AB_10693544 |
Goat anti-rabbit IgG DyLight 633 | Thermo Fisher Scientific | 35562; RRID:AB_1307539 |
Goat anti-rabbit Abberior Star Red | Abberior GmbH | STRED; RRID:AB_2833015 |
Goat anti-rabbit Alexa Fluor 555 | Life Technologies | A-21430; RRID:AB_10374475 |
Donkey anti-goat Alexa Fluor 488 | Life Technologies | A-11055; RRID:AB_2534102 |
Goat anti-rabbit IgG-HRP | Santa Cruz Biotechnology | sc-2054; RRID:AB_631748 |
anti-mouse IgG-HRP | Cell Signaling Technology | 7076; RRID:AB_330924 |
Critical Commercial Assays | ||
CellTiter-Blue® Cell Viability assay | Promega | G8080 |
Qproteome Cell Compartment Kit | QIAGEN | 37502 |
2-D Quant Kit | GE Healthcare | 80648356 |
ELISA MAX™ Deluxe Set Human IL-1β | BioLegend | 437004 |
ELISA MAX™ Deluxe Set Human IL-6 | BioLegend | 430504 |
ELISA MAX™ Deluxe Set Human IL-10 | BioLegend | 430604 |
ELISA MAX™ Deluxe Set Human TNFα | BioLegend | 430204 |
KASPar assay | LGC Genomics | https://www.biosearchtech.com |
Experimental Models: Cell lines | ||
MH-S | ATCC | ATCC:CRL-2019 |
J774A.1 | ATCC | ATCC:TIB-67 |
HeLa | ATCC | ATCC:CCL-2 |
RAW264.7 | ATCC | ATCC:TIB-71 |
Experimental Models: Organisms/Strains | ||
Aspergillus fumigatus strain ATTCC46645 | ATCC | ATCC:46645 |
Aspergillus fumigatus strain ATTCC46645 pksP | Jena Microbial Resource Collection (JMRC), HKI Jena | (Langfelder et al., 1998) |
Flot−/− mice (male) | Ben J. Nichols (Cambridge, UK) | (Bitsikas et al., 2014) |
C57BL/6J mice (male) | Service Unit Experimental Biomedicine of the University Hospital Jena, Jena, Germany | N/A |
Software | ||
Custom-written Fiji macro, based on the ImageJ version 1.51w | N/A | https://fiji.sc; (Schindelin et al., 2012) |
Imaris 8.4.1 | Bitplane AG | https://imaris.oxinst.com |
Quantity One | Bio-Rad | https://www.bio-rad.com |
Analyst 1.4 | Sciex | https://sciex.com |
Zeiss ZEN software 2.3 | Zeiss | http://www.zeiss.de/ |