Table 1:
Evidence for cryptic divergence in Panamanian birds, organized by taxonomy. Results show species with COI splits defined as multiple BINs, with additional mitochondrial markers indicated. Distances calculated on BOLD-aligned sequences with K2P method. Species with more than two unique BIN assignments have pairwise COI divergence for all inter-BIN comparisons listed.
| Species | Family | Pairwise COI divergence | Other included markers |
|---|---|---|---|
| Nyctidromus albicollis | Caprimulgidae | 5.16% | cytB, ND2, whole mitogenome |
| Laterallus albigularis | Rallidae | 3.20% | |
| Jacana spinosa | Jacanidae | 1.72% | |
| Chloroceryle aenea | Alcedinidae | 2.19% | ND2, whole mitogenome |
| Baryphthengus martii | Momotidae | 3.48% 3.31% 3.35% |
Whole mitogenome |
| Momotus momota | Momotidae | 5.64% | Whole mitogenome |
| Malacoptila panamensis | Bucconidae | 3.84% | ND3, whole mitogenome |
| Galbula ruficauda | Galbulidae | 8.25% | cytB, whole mitogenome |
| Manacus vitellinus | Pipridae | 5.08% | |
| Schiffornis turdina | Tityridae | 2.20% | Whole mitogenome |
| Myiobius sulphureipygius | Onychorhynchidae | 2.19% | |
| Tyrannus melancholicus | Tyrannidae | 3.00% | |
| Cercomacroides tyrannina | Thamnophilidae | 3.00% | |
| Todirostrum cinereum | Tyrannidae | 2.87% | |
| Microrhopias quixensis | Thamnophilidae | 2.51% | ND2, cytB, whole mitogenome |
| Gymnocichla nudiceps | Thamnophilidae | 3.99% | ND2, cytB, whole mitogenome |
| Myrmeciza exsul | Thamnophilidae | ND2, cytB, whole mitogenome | |
| Automolus ochralaemus | Furnariidae | 5.38% | cytB, whole mitogenome |
| Sclerurus guatemalensis | Furnariidae | 2.08% | ND2, whole mitogenome |
| Xenops minutus | Furnariidae | 2.77% | ND2, cytB, whole mitogenomes |
| Cyclarhis gujanensis | Vireonidae | 4.66% | |
| Pachysylvia decurtata | Vireonidae | 4.20% | ND2, whole mitogenome |
| Microbates cinereiventris | Polioptilidae | 6.12% | ND2, whole mitogenome |
| Cantorchilus nigricapillus | Troglodytidae | 2.51% | cytB, ATPase 8 and 6, whole mitogenome |
| Henicorhina leucosticta | Troglodytidae | 6.13% 6.89% 7.61% |
cytB, ATPase 8 and 6, ND2, whole mitogenome |
| Henicorhina leucophrys | Troglodytidae | 4.63% | |
| Turdus assimilis | Turdidae | 2.52% | |
| Catharus fuscater | Turdidae | 5.67% | |
| Arremon aurantiirostris | Passerellidae | 6.92% | ND2, whole mitogenome |
| Arremon brunneinucha | Passerellidae | 3.49% | |
| Myiothlypis fulvicauda | Parulidae | 2.86% | |
| Setophaga petechia | Parulidae | 1.24% | |
| Myioborus miniatus | Parulidae | 3.18% | |
| Icterus mesomelas | Icteridae | 1.24% | |
| Cyanocompsa cyanoides | Cardinalidae | 5.60% | ND2, cytB, whole mitogenome |
| Ramphocelus passerini | Thraupidae | 1.65% | Whole mitogenomes |
| Sporophila americana | Thraupidae | 8.49% | Whole mitogenomes |