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[Preprint]. 2023 Mar 25:2023.03.24.534103. [Version 1] doi: 10.1101/2023.03.24.534103

Figure 4. Evolutionary history of LRV1 in Peru and Bolivia.

Figure 4.

A) Midpoint-rooted maximum likelihood phylogenetic tree based on 31 LRV1 genomes of Lb from Peru and Bolivia, one LRV1 genome (YA70) of Lb from French Guiana and 26 LRV1 genomes of Leishmania guyanensis from Brazil, Suriname and French Guiana (the latter were omitted for visibility reasons). The position of the root is indicated with a dashed line. Clades are colored according to the different viral lineages (L1-L9). Colored boxes at the tips of each branch represent the population structure of Lb (see legend), with colors matching the different groups of parasites as shown in Figure 1. Note that the tetraploid hybrid parasites LC2318 and CUM68 from Peru and Bolivia, and isolate YA70 from French Guiana were omitted from the analyses of parasite population structure; these were thus not assigned to any parasite group. B) Ecological regions in Peru and Bolivia as per Köppen-Geiger climate classification. Only three ecological regions were labeled for visibility reasons. The distribution is shown for LRV+ Lb isolates belonging to the nine viral lineages L1-L9.