Table 2.

Pairix performance for 1D queries

Query region	Reads in region	Time (s) Pairix	Time (s) Tabix	Time (s) Samtools
chr13:16 285 749–17 363 019	124 649	5.94	6.21	5.98
chr13:16 285 749–17 363 019	17 094	0.82	0.85	0.71