Table 1. Genome data for Vanessa cardui, ilVanCard2.1.
| Project accession data | |
|---|---|
| Assembly identifier | ilVanCard2 |
| Species | Vanessa cardui |
| Specimen | ilVanCard1 (RNA-Seq);
ilVanCard2 (genome assembly); ilVanCard3 (Hi-C) |
| NCBI taxonomy ID | NCBI:txid171605 |
| BioProject | PRJEB42869 |
| BioSample ID | SAMEA7523147 |
| Isolate information | Female, whole organisms |
| Raw data accessions | |
| PacificBiosciences SEQUEL II | ERR6608653 |
| 10X Genomics Illumina | ERR6054369-ERR6054372 |
| Hi-C Illumina | ERR6054373 |
| Illumina polyA RNA-Seq | ERR6054374 |
| Genome assembly | |
| Assembly accession | GCA_905220365.1 |
| Accession of alternate haplotype | GCA_905220355.1 |
| Span (Mb) | 425 |
| Number of contigs | 128 |
| Contig N50 length (Mb) | 7 |
| Number of scaffolds | 37 |
| Scaffold N50 length (Mb) | 15 |
| Longest scaffold (Mb) | 17 |
| BUSCO * genome score | C:98.2%[S:97.9%,D:0.3%],
F:0.8%,M:1.0%,n:1658 |
| Gene annotation | |
| Number of protein coding genes | 12,821 |
| Average coding sequence length (bp) | 1,738 |
| Average number of exons per transcript | 9.44 |
| Average exon size (bp) | 393 |
| Average intron size (bp) | 2358 |
* BUSCO scores based on the lepidoptera_odb10 BUSCO set using v5.1.2. C= complete [S= single copy, D=duplicated], F=fragmented, M=missing, n=number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/Vanessa%20cardui/dataset/CAJMZP01/busco.