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. 2023 Mar 29;35:100972. doi: 10.1016/j.ymgmr.2023.100972

Table 1.

GCK variants in this study. Protein and nucleotide effect are annotated according to RefSeq NM_000162. Position called with human reference genome hg19. Classification refers to the classification in ClinVar, if the variant is known, otherwise manually classified according to the ACMG Standards and Guidelines [20]. MAF is the frequency in GnomAD. MAF = Minor Allele Frequency in the Genome Aggregation Database [19], MODY = Maturity Onset Diabetes of the Young, VUS = Variant of Uncertain Significance.

Protein Effect Nucleotide Effect Position Classification MAF Previosuly seen in MODY?
p.D4N c.10G > A 7_44228543_C_T VUS 0.00003 No
p.G72R c.214G > A 7_44192019_C_T Pathogenic 0.000004 Yes [3]
p.G72R c.214G > C 7_44192019_C_G Pathogenic 0 No
p.E120K c.358G > A 7_44191875_C_T VUS 0.000004 No
p.C220Y c.659G > A 7_44189379_C_T Likely Pathogenic 0 No
p.T228M c.683C > T 7_44187429_G_A Pathogenic 0.000004 Yes [3]
p.G246A c.737G > C 7_44187375_C_G VUS 0 Yes [30]
p.T342P c.1024A > C 7_44185325_T_G Benign 0.000008 Previously [3,27]