Skip to main content
. 2023 Mar 2;26(4):106314. doi: 10.1016/j.isci.2023.106314
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-HIF-1α rabbit monoclonal antibody, clone D1S7W (Western blot) Cell Signaling Technology Inc. 36169; RRID: AB_2799095
anti-α-tubulin mouse monoclonal antibody, clone DM1A (Western blot) Cell Signaling Technology Inc. 3873; RRID: AB_1904178
Anti-PGC-1alpha rabbit polyclonal (IHC) Abcam Ab84139; RRID: AB_1860776
Anti-NDUFA9 mouse monoclonal, clone 20C11B11B11 (IHC) Abcam Ab14713; RRID: AB_301431

Biological samples

Tissue microarray in paraffin (human normal organs, custom) IRIC Histology Platform, University of Montreal N/A
Human skin (unexposed forearm) sections in paraffin (young and aged non-diseased women) Pageon et al.70 N/A

Chemicals, peptides, and recombinant proteins

Capryloyl salicylic acid (C8-SA) L’OREAL/ NOVEAL N/A
Dimethyl-2-oxoglutarate (dimethyl-2OG) MilliporeSigma 349631
Lipofectamine 2000 Thermo Fisher Scientific 11668027
Lipofectamine RNAiMAX Thermo Fisher Scientific 13778075
HiPerFect Transfrection Reagent QIAGEN 301704
4 siRNA duplexes against human PPARGC1A QIAGEN SI00101024, SI00101031, SI02639826, SI02639833
4 siRNA duplexes against human PPARGC1B QIAGEN SI03043306, SI0310431, SI00150024, SI02647911
AllStars non-targeting control siRNA QIAGEN SI03650318
13C5-L-glutamine Cambridge Laboratories Inc. CLM-1822
Western Lightning® Plus-ECL enhanced chemiluminescence substrate Perkin-Elmer NEL103E001EA
Propidium iodide(PI)/RNase staining solution Cell Signaling Technology Inc. 4087
Polybrene (hexadimethrine bromide) MilliporeSigma 107687
Y-27632 ROCK inhibitor MilliporeSigma SCM075
Retinol Sigma R7632

Critical commercial assays

Aurum Total RNA Mini Kit Bio-Rad 7326820
PureLink RNA Mini Kit Thermo Fisher Scientific 12183020
iScript cDNA synthesis kit Bio-Rad 1708890
High-Capacity cDNA Reverse Transcription Kit with RNase Inhibitor Thermo Fisher Scientific 4374966
SsoAdvanced Universal SYBR Green Supermix Bio-Rad 1725272
TaqMan Fast Advanced Master Mix Thermo Fisher Scientific 4444556
Seahorse XF Cell Mito Stress Test Kit Agilent 103015-100
PierceTM BCA protein assay Thermo Fisher Scientific 23227

Deposited data

Raw and analyzed transcriptomic data This paper GEO: GSE108674

Experimental models: Cell lines

Normal human epidermal keratinocytes (NHEK) PromoCell 12003
Normal human epidermal keratinocytes (NHEK) Lonza 192627
Normal human epidermal keratinocytes (NHEK) Thermo Fisher Scientific C0055C
Normal human foreskin keratinocytes (reconstructed epidermis) Episkin N/A
Human: HaCaT Addexbio T0020001
Human: HEK 293T ATCC CRL-3216

Software and algorithms

DAVID Bioinformatics Huang et al.71; Sherman et al.72 SCR_001881
Gene Ontology Ashburner et al.73; Gene Ontology Consortium74 SCR_002811
R Project for Statistical Computing, R Bioconductor R Foundation for Statistical Computing, (R Development Core Team, 2019) SCR_001905
SCR_006442
GeneOverlap v.1.34.0 Shen Lab http://shenlab-sinai.github.io/shenlab-sinai/
Pscan Zambelli et al.75 http://159.149.160.88/pscan/
Gene Set Enrichment Analysis (GSEA) Mootha et al.76; Subramanian et al.77 SCR_003199
CytoScape Shannon et al.78 SCR_003032
Enrichment Map Merico et al.79 N/A
Genotype-Tissue Expression (GTEX) NIH Common Fund SCR_013042
Correction for naturally occurring isotopes in-house JAVA program Nanchen et al.80; McGuirk et al.81 N/A
FACSDivaTM software BD Biosciences SCR_001456
ImageScope software Leica Biosystems SCR_014311
Chemstation software Agilent SCR_015742