Table 5.
Sequenced and Mapped Reads of ChIP-seq Samples
| Samples of ChIP-seq study | Total sequenced reads, n | Mapped reads, n (% of total) |
|---|---|---|
| ARID1A_1 | 17,267,600 | 12,735,130 (73.8%) |
| ARID1A_2 | 17,906,229 | 12,205,138 (68.2%) |
| ARID1A_EGF1 | 15,921,479 | 11,418,113 (71.7%) |
| ARID1A_EGF2 | 19,250,899 | 13,254,857 (68.9%) |
| H3K27ac_siCtrl1 | 19,842,993 | 15,075,210 (76%) |
| H3K27ac_siCtrl2 | 16,989,464 | 13,830,662 (81.4%) |
| H3K27ac_siCtrl_EGF1 | 15,962,810 | 13,080,677 (81.9%) |
| H3K27ac_siCtrl_EGF2 | 17,940,883 | 14,397,202 (80.2%) |
| H3K27ac_siARID1A1 | 14,421,138 | 11,678,801 (81%) |
| H3K27ac_siARID1A2 | 18,872,697 | 14,649,690 (77.6%) |
| H3K27ac_siARID1A_EGF1 | 18,060,868 | 14,479,303 (80.2%) |
| H3K27ac_siARID1A_EGF2 | 13,806,174 | 10,872,189 (78.7%) |
| Input_ctrl | 11,395,577 | 8,294,689 (72.8%) |
| Input_EGF | 7,366,864 | 5,441,073 (73.9%) |