Table 1.

Sequencing statistics.

General summary	Control	readfish	UNCALLED	Amplicon	MG_TB23178
Mean read length	6212	397	1395	905	438
Mean read quality	13	13	13	13	10
Median read length	4878	381	1163	841	432
Median read quality	13	13	13	13	10
Number of reads	2,213,087	11,460,014	5,859,263	13,688,610	9,208,422
Read length N50	10,288	404	1842	976	464
STDEV read length	5329	429	803	439	129
Total bases	13,746,798,479	4,551,882,404	8,170,637,866	12,389,957,129	4,033,992,524
Total bases scaled by pores	12,154,552	3,134,905	6,505,285	10,290,662	3,714,542
# of primary aligned reads to TB	1974	10,834	5447	10,602,938	32
# of bases (Mb) aligned to TB	10.7	42.0	23.5	9172.3	0.03
# of pores when used	1131	1452	1256	1204	1086
DNA input for sequencing (ng)	521	556	574	66	586
Sequencing duration	2d 18 h 21 m	1d 19 h 13 m	1d 18 h 12 m	1d 2 h 46 m	2d 18 h 55 m