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. 2023 Apr 1;14:1836. doi: 10.1038/s41467-023-37478-w

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© The Author(s) 2023, corrected publication 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — a The accuracy performances of the DR methods on all real CyTOF datasets, grouped by the 11 cohorts. Orange color indicates better performance, while blue color indicates worse performance. All submetrics of the accuracy criterion were averaged. “*” indicates that forced 10% downsampling was performed for training in the case that the methods aborted because of sample size. “scvis” is always performed on 10% down-samples per authors’ recommendation. Small blue dot indicates error. b The accuracy performances of the DR methods for each accuracy category. Results for all real CyTOF datasets were averaged, and the results for each detailed sub-metric of accuracy was shown. Orange color indicates better performance, while blue color indicates worse performance. c The accuracy performances of the DR methods on the simulated CyTOF data. The performances were visualized as a function of the characteristics of the CyTOF datasets. Orange color indicates better performance, while blue color indicates worse performance. All submetrics of the accuracy criterion were averaged. “*” Indicates that 10% downsampling was performed. Source data are provided as a Source Data file.