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. 2023 Apr 1;14:1836. doi: 10.1038/s41467-023-37478-w

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© The Author(s) 2023, corrected publication 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — a Visualization of the DR results of several top and popular methods on the Levine32 dataset, with cells colored by their cell types. The COR, KNN and ARI accuracy metrics, for each method, were also labeled beside each plot. b, e Visualization of the DR results from SAUCIE and UMAP, for the B cells only. In each panel, the cells were colored by the expression of HLA.DR (b), CD22 (c), CD19 (d), and CD45 (e). Red refers to higher expression and yellow refers to lower expression. Source data are provided as a Source Data file.