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. 2023 Mar 14;6(1):pbad005. doi: 10.1093/pcmedi/pbad005

Table 1.

Comparison between the analytical techniques in metabolomics.

Advantages Disadvantages
NMR Non-destructive; Relatively poor sensitivity;
High throughput; Limited metabolites coverage
Unbiased sample analysis
GC-MS High sensitivity and specificity; Requirement for derivatization
Reproducibility; Biased sample analysis (gasified and stable metabolites);
Public database/libraries Longer sample preparation time
LC-MS/MS High sensitivity and specificity; Sample needs to be ionized;
Detecting semipolar, polar and high weight metabolites; Poor for unknown metabolites identification;
Reproducibility; Local database dependence
Nonessentials for derivatization;
Wide metabolites coverage

NMR, nuclear magnetic resonance spectroscopy; GC-MS, gas chromatography-mass spectrometry; LC-MS/MS, liquid chromatography-tandem mass spectrometry.