Table 2.
Statistics of biomedical entities in iBKH
| Entity Type | Number | Included Identifiersa |
|---|---|---|
| Anatomy | 23,003 | Uberon ID, BTO ID, MeSH ID, Cell Ontology ID |
| Disease | 19,236 | Disease Ontology ID, KEGG ID, PharmGKB ID, MeSH ID, OMIM ID |
| Drug | 37,997 | DrugBank ID, KEGG ID, PharmGKB ID, MeSH ID |
| Gene | 88,376 | HGNC ID, NCBI ID, PharmGKB ID |
| Molecule | 2,065,015 | CHEMBL ID, CHEBI ID |
| Symptom | 1,361 | MeSH ID |
| Pathway | 2,988 | Reactome ID, KEGG ID, Gene Ontology ID |
| Side-effect | 4,251 | UMLS CUI |
| Dietary Supplement Ingredient | 4,101 | iDISK ID |
| Dietary Supplement Product | 137,568 | iDISK ID |
| (Dietary) Therapeutic Class | 605 | iDISK ID, UMLS CUI |
Abbreviations: BTO = BRENDA Tissue Ontology; ChEBI = Chemical Entities of Biological Interest; HGNC = HUGO Gene Nomenclature Committee; ID = identifier; KEGG = Kyoto encyclopedia of genes and genomes; iDISK = integrated dietary supplement knowledge base; MeSH = Medical Subject Headings; NCBI = National Center for Biotechnology Information; OMIM = Online Mendelian Inheritance in Man; UMLS CUI = Unified Medical Language System - Concept Unique Identifiers.
a
The identifiers used for entity term normalization.